barSeed - Barley Seed Development Database

Probe CUST_33703_PI390587928

Source Contig U35_24090

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33703_PI390587928	Hv_44K_v2	CAAGATTTGAAGAGAAGCAAATTTACCGAATTGATCATCTTTTGGGGAAGGATCTAATTG	926	GeneList: saddlebrown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.243	0.245	0.791	1.921	1.151	1.759
Raw	3.536	5.734	22.617	86.546	17.972	30.760

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_79070.5	1329	2e-24	158 - 217	100	60 / 60	minus	None
MLOC	MLOC_79070.1	1956	2e-24	1075 - 1134	100	60 / 60	minus	ABC25445
MLOC	MLOC_79070.2	2228	2e-24	1047 - 1106	100	60 / 60	minus	ABC25445
MLOC	MLOC_79070.3	2153	2e-24	1047 - 1106	100	60 / 60	minus	ABC25445
JLOC1	JLOC1_52689.4	2302	8e-25	1038 - 1097	100	60 / 60	plus
JLOC1	JLOC1_52689.3	2368	8e-25	1104 - 1163	100	60 / 60	plus
Harvest21	ABC19192	993	3e-25	927 - 986	100	60 / 60	plus
Harvest35	U35_24090	993	3e-25	927 - 986	100	60 / 60	plus

Contig Sequence (993 bp)

>U35_24090 993 Hv_44K_v2
CGGCCGCCGCCACGAGACTAGAAAGAAGCGGGGCGGGATACGGCGGACTGAGAAAGAAGC
GCTAACCCCGAGCATGGTTACGACAGTCCTCGCCGTGGCGGCTTCAGCAGCTCCCGCGCC
GCCTCCGTCGTTGGCTGCGCGCTTCAGCCCGGTTGCAGGACCTGCTGTCGGTTTTAGAGC
GCATTGTTGGATTACTGCCAAGATGAAGCTCCACAAGGCCCTGGGGAGGCATGGATGGCA
AGTCCAGAGAAAGCTGGATATTCGAGGGGATGAAACTGGAGGTGAAACGGCAAATACAAG
CTCTGTTATGTCAGATAACTCGATCGATGACAAAGGTTTATTGCATCTGGGACTCAACAA
CTCTGAAGCTGATCGTCCTGTACTAGAGGAAGACCTTGTTCTGTTTGATAACTTTAATGA
CCAACCTGAAAGTGTACCATCTCTTTGCATTGCTGTCATTGGAGCTACTGGCGAACTGGC
AAGAAGTAAAGTCTTCCCAGCACTATTTGCTCTGTATTACAGTGGTTTTCTTCCTCAGAA
TGTTGCCATATTTGGATATTCTAGAAAGACATTGGCAGACGAGGATTTAAGATCCATGAT
TGAATCCAATTTGACCTGTCGGGTAGATCACCACGAAAACTGTGAAGACAAGTTAAATGA
ATTCCTTAAAAGGACATACTATGTCGATGCAGGACACGATAATAAAGATGGGATGGCGAA
ACTAAATTTGAGAATGACACAGATAGAGGGCACTTGTGCAGCAAACAGGATATTCTACCT
TGCTGTTCCCCAAGAGGCACTTCTTGATGTGGCATTGCCATTATCTGACATTGCCCAAAC
TAAGCATGGCTGGAATAGGATAATTATCGAGAAACCATTTGGCTTCACTAGTTTGTCCTC
ACAACGGGTAACACAGTCTTTGNTGTCAAGATTTGAAGAGAAGCAAATTTACCGAATTGA
TCATCTTTTGGGGAAGGATCTAATTGAAAATCT

Homology of Contig U35_24090 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g20300.1	630	3e-135	protein\|glucose-6-phosphate 1-dehydrogenase, chloroplast precursor, putative, expressed
Brachypodium v1_2	Bradi1g64070.1	627	8e-154
Arabidopsis v10	AT1G09420.2	635	2e-82	\| Symbols: G6PD4 \| glucose-6-phosphate dehydrogenase 4 \| chr1:3038640-3041715 REVERSE LENGTH=635