barSeed - Barley Seed Development Database

Probe CUST_33696_PI390587928

Source Contig U35_50360

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33696_PI390587928	Hv_44K_v2	TCATATTGTTGCAGCGGAGAGGTGCGAATTAATACCTTATAAACAGGTTTTGAGGTGATT	433	GeneList: lightyellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.054	0.150	1.090	1.944	1.116	1.079
Raw	17.214	69.844	473.757	1331.248	269.639	279.134

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC52464	493	3e-25	434 - 493	100	60 / 60	plus
Harvest35	U35_50360	493	3e-25	434 - 493	100	60 / 60	plus

Contig Sequence (493 bp)

>U35_50360 493 Hv_44K_v2
TTCTCGCCCTACTCCCGTCCCGTGGCTAGAAGCCAATAATTTGTCTGCCATGGCGTCGGA
GCCGGTGATCGGGAAGCTCAGCGTCCGCGTTGTCCGAGGCCACAACCTCATCATCGCCGA
CCCGCTCAGCTACACCAGCGACCCCTATGTGGTTCTCTACTACGGCTCCGAGGTCGGACC
CTCATCCCCTTCTCCCGAGTCCTTGACATAGGAGCCGTGTGTTGCCGCCGGCCGCTTAGC
GCGGCATGGAAAAGGTCGCAACCAATGACCCACTCATACATAGGTTATGGCGGCACGACA
TCGGGGTCGGGGAATCGAGCGCAGGGAGGGTGACGGTTTTCTCCGGAATCATTTTGTGCT
CACAAGATGTTCGATAGAAGAATAAGTTTTGGACCAACTATTATTTGCGGTTAAGCTAGG
TTCTTATATATTCTCATATTGTTGCAGCGGAGAGGTGCGAATTAATACCTTATAAACAGG
TTTTGAGGTGATT

Homology of Contig U35_50360 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None