- Probe CUST_33694_PI390587928
- Source Contig U35_24099
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_33694_PI390587928 | Hv_44K_v2 | TTCATAGCATTGACCGTAATGGCACCGTATATGTTGGTTTGATAGGAATGGACACCCTCT | 399 | GeneList: darkgrey MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.198 | 0.494 | 1.667 | 2.993 | 1.210 | 1.015 |
| Raw | 4.979 | 20.590 | 66.089 | 188.631 | 26.956 | 24.597 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_70404.4 | 1802 | 2e-24 | 283 - 342 | 100 | 60 / 60 | minus | ABC17607 |
| MLOC | MLOC_70404.2 | 2049 | 2e-24 | 625 - 684 | 100 | 60 / 60 | minus | ABC17607 |
| MLOC | MLOC_70404.1 | 2386 | 2e-24 | 782 - 841 | 100 | 60 / 60 | minus | ABC17607 |
| MLOC | MLOC_70404.3 | 1598 | 2e-24 | 615 - 674 | 100 | 60 / 60 | minus | ABC17607 |
| JLOC1 | JLOC1_46722.1 | 2225 | 8e-25 | 1366 - 1425 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC20096 | 551 | 3e-25 | 400 - 459 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_24099 | 552 | 3e-25 | 400 - 459 | 100 | 60 / 60 | plus |
Contig Sequence (552 bp)
>U35_24099 552 Hv_44K_v2 GGGATCGCCCCTTGATGTCAGATATCTTACAAGCATTTGAAAGTGCTAAAGATGTGGATT ATGACAACAATGGCTGGGATAGTTCTGAAAACCCAGGGGTAGTAGTGCCAAGTCACACCA ATTGGTCACACTTTAAGGATAAGTTGCAAGTTGGTGACAAGGTCCGCTCGAGAAAGGTTA AAAATTCTTGTACTCCTGAAACAATGGAAATCCCTGATGGAACCATAGTTGGCATGGAGG ATGGAGAATGTGATAGCTACATTCTTGTACGAGTCCATGGAATCCACGACCCTTTGAAGA TCCGTTCCTCGACAGTGGAAAGGGTGACCTATGGTTTCGCTGCCGGAGACTGGGTAAGGC TTAGGGAGGAAGACAAGAAGCGGTCTCAGGTCGGAATTCTTCATAGCATTGACCGTAATG GCACCGTATATGTTGGTTTGATAGGAATGGACACCCTCTGGAAGGGGGGATATTCANATC TCCAAATGGCCGAAGCCTACTGTGTTGGGCAATTTGTGAGGCTGAGACCTCACACTTCAA GCCCCCGGTTCG
Homology of Contig U35_24099 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os06g43270.1 | 631 | 3e-97 | protein|protein kinase domain containing protein, expressed |
| Brachypodium v1_2 | Bradi1g30360.2 | 632 | 6e-104 | |
| Arabidopsis v10 | AT4G32250.1 | 611 | 8e-52 | Protein kinase superfamily protein | chr4:15570285-15572528 REVERSE LENGTH=611 |