barSeed - Barley Seed Development Database

Probe CUST_33693_PI390587928

Source Contig U35_50362

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33693_PI390587928	Hv_44K_v2	CTGCATTTGATTGTTCTAGTGCAGTAGACAGTAGTGACATGTTAACAGATTCCTTTGAAC	599	GeneList: darkslateblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.476	1.780	1.257	0.834	0.360	0.456
Raw	278.641	544.180	329.237	340.431	51.571	71.356

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK249722.1	1925	2e-24	1844 - 1903	100	60 / 60	plus	None
JLOC1	JLOC1_14599.2	1064	4e-23	973 - 1032	98	59 / 60	plus
JLOC1	JLOC1_14599.1	1159	4e-23	1068 - 1127	98	59 / 60	plus
Harvest21	ABC52467	659	3e-25	600 - 659	100	60 / 60	plus
Harvest35	U35_50362	659	3e-25	600 - 659	100	60 / 60	plus

Contig Sequence (659 bp)

>U35_50362 659 Hv_44K_v2
CGAGGGGAAAGAACTACTATATGATGGCTCGATTATCTGCTGAAAAATCTGCTGGCGAGA
TCACCAAGTCCAAACAAGAGTCCAAAAATGAGTTATGTCTTGATCTGCGCTCACAAGATG
CAGCAAATGTAGCAAATCTTCTGAGACTTCATCTTAGGCAGTTGGCTAACATCCCATCTT
TTGAGAATCTGAGAGTTATTATTGGTGTCGATGATGGCACTTTCAAGATGGGACAAAGAA
GAAGGAAGGTTGAGAAGTTTCTGGAGAAAAAATCAGTCGAGTGGACCGAAGATGAGGCCA
ATCCTGGGACCATTCTCATTCCGATTAATCAAGTGAAAGACCAGTGAGTATAGCTTGGCG
TACAAAGGTCGTCCGACACAAAGCTGACAGAAGATGCTCTTAGCTGCTAGTTTTATCATT
TGGTGCCGTTTTGGATCTAGGCGATTTCTGTTCATTTTGTGGATATGGAGGATGGGGAGT
GCGTTGCATATTCCTTTTTGTTCACACACAGGAGATATTTCCGGCCGGCCTAAAAATTAC
GATTTGGCCGAGATGATTTAGCTGCAGTCTTAACCCTGGAAACGATCTTCTAATGCTTTC
TGCATTTGATTGTTCTAGTGCAGTAGACAGTAGTGACATGTTAACAGATTCCTTTGAAC

Homology of Contig U35_50362 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi3g49860.1	501	7e-61
Arabidopsis v10	None