barSeed - Barley Seed Development Database

Probe CUST_33692_PI390587928

Source Contig U35_50363

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33692_PI390587928	Hv_44K_v2	ACGATGCTTATGTCGTCGTGCATGTTATGGACGTTACAGATGGAATAGTGTACCTGCGTA	495	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.231	1.801	1.202	0.707	0.151	0.107
Raw	190.673	246.023	137.123	130.471	9.862	7.000

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_56652.3	1392	2e-24	184 - 243	100	60 / 60	minus	None
MLOC	MLOC_56652.2	1534	2e-24	334 - 393	100	60 / 60	minus	None
MLOC	MLOC_56652.1	1820	2e-24	623 - 682	100	60 / 60	minus	None
JLOC1	JLOC1_36665.1	932	8e-25	361 - 420	100	60 / 60	plus
Harvest21	ABC52468	559	3e-25	496 - 555	100	60 / 60	plus
Harvest35	U35_50363	559	3e-25	496 - 555	100	60 / 60	plus

Contig Sequence (559 bp)

>U35_50363 559 Hv_44K_v2
TTTCAGTTCCCATAATCTCCTCCTCCTCGGAAGAGGACCCCGGCTCGCCGCCCCGTGTGG
TCTGCTTCGACTGCGGCTTCCTGTACGCCTCCGTCGGCGTCATCTCGCCAGGCAGCACCG
AGATCGATTGGCAGATTTTCCCCGAGGCTTTGATCCCGGGAGCAGCGGGAGCCACCGGTA
AAATGGTGAACGGGTCCCTCTACTGGACACACCCAGGGACGCCCTACATCACCGTGCTCA
ACACCGCCACGATGCACTTCTCCAGGATGGACCTGCCGCCGCTCTTGGGGGTCGAAGAAG
GCAGCAACCGTGAGTGTGATTTCGTGCTTGGTAATGCCAAGGATGGCAGGCCCTGCATCG
TCTCCCCTGACCCGTGGGGTGGCTGCGAGCTCCTGGTTTTTTTCTGGAGACCCGATGAAT
ACGACGGTGTTGAGAGGTGGAAGCTGGACCAGACGTTCAAACTGGAAAAGATCAATCAGC
TCACCGAGGTTGAAGACGATGCTTATGTCGTCGTGCATGTTATGGACGTTACAGATGGAA
TAGTGTACCTGCGTACCGC

Homology of Contig U35_50363 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None