barSeed - Barley Seed Development Database

Probe CUST_33688_PI390587928

Source Contig U35_36075

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33688_PI390587928	Hv_44K_v2	AAGACATCTAAAGCGGACGCAATAAGCAAAGATTTGGTCCGAAGGGGTTTCTGTAGCGTA	122	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK250702.1	1334	7e-23	893 - 952	98	59 / 60	plus	None
MLOC	MLOC_19229.1	1014	7e-23	351 - 410	98	59 / 60	minus	None
JLOC1	JLOC1_13342.1	1083	4e-23	602 - 661	98	59 / 60	plus
Harvest35	U35_36075	308	3e-25	123 - 182	100	60 / 60	plus

Contig Sequence (308 bp)

>U35_36075 308 Hv_44K_v2
CCCTTTCGAAAATGCTCGAGCGGCCGCTAGATTACCTTGGGTCATTTGATAAGTACTGCT
GGAGCTTTGTGAACCACAGACCTATATTGAGCACATTCAGGTATCCCCGTCAGGTTCCTG
TCAAGACATCTAAAGCGGACGCAATAAGCAAAGATTTGGTCCGAAGGGGTTTCTGTAGCG
TAGGCCCAACGGTCGTGTACACCTTCATGCAAGTCTCCGGCATGACGAACGACCACCTTG
TCTCCTGCTACCGGTTTGCTGAATGCGCCGCAGCCGCAACCGGTGCTAAGCCTACCACCG
AATCTGGC

Homology of Contig U35_36075 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None