- Probe CUST_33686_PI390587928
- Source Contig U35_48050
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_33686_PI390587928 | Hv_44K_v2 | AGAGTGTGACTCTCACGTTCCTTTTTGTTTTCTTTCGGTTCTTTTTCCATTCCAAGGTGT | 58 | GeneList: skyblue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.289 | 0.480 | 2.064 | 1.716 | 0.871 | 1.253 |
| Raw | 3.126 | 11.676 | 49.391 | 62.822 | 11.592 | 18.479 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| Harvest35 | U35_48050 | 373 | 3e-25 | 59 - 118 | 100 | 60 / 60 | minus |
Contig Sequence (373 bp)
>U35_48050 373 Hv_44K_v2 TTTTTTTTTTTTTTTTTCAAAAAAAAAAAAAACAGACCAATCCCAAAGAGAGAAAAAAAC ACCTTGGAATGGAAAAAGAACCGAAAGAAAACAAAAAGGAACGTGAGAGTCACACTCTGC AAGCCCATCTAAAGATACAGAGCTGCTCCCCGTATTCATTCGTCAATTACGCATTCGCGC CATTGATCATTTCCTGGGAGAGCCTCCCCAATGCAAAGTACGAGGAGCCTCCCTCGGCCA CGGCCTTCCTGCACCCCCCTTTAATTTCCATGGCCCTCGCCCTAACCTTTTTCCCCTCGT GGGAGTCGCCGTCCATGAGCGCCTTCACTGCCCGTTCCAGCTCCGACGCCTGGACCCAGT TGCTCCTTTTCCT
Homology of Contig U35_48050 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |