- Probe CUST_33682_PI390587928
- Source Contig U35_48055
Probe Details
Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
---|---|---|---|---|
CUST_33682_PI390587928 | Hv_44K_v2 | GCGTGCTCTCGGCACAGACAAGTGATGATAAAATGTTTAGTAATGATTTGCTCCAAAAAA | 11 | GeneList: midnightblue MasterList: None |
Probe Values
3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
---|---|---|---|---|---|---|
Normalized | 0.356 | 0.204 | 0.382 | 2.613 | 4.557 | 5.464 |
Raw | 7.322 | 4.834 | 12.380 | 124.177 | 76.596 | 104.187 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
---|---|---|---|---|---|---|---|---|
Harvest35 | U35_48055 | 334 | 3e-25 | 12 - 71 | 100 | 60 / 60 | minus |
Contig Sequence (334 bp)
>U35_48055 334 Hv_44K_v2 TTTTTTTTTTTTTTTTTGGAGCAAATCATTACTAAACATTTTATCATCACTTGTCTGTGC CGAGAGCACGCATAGGCACATTACGCCGGCGACAATCGCCGGGAAAGGATTGAGACAGGA AGAAAGGGAAAGGTGAGAGATGCCTCGTGGTCTTTTGTACTTGTTCCCGCGCCTTGTTCA TGACGGCGGTCGTCGTCTTGAGAGCGGCCGTCGCCGCCATGGGGTGGGCGGGCTACGCCG CCACAACCGCAACACCCATGATCTTCGTCGGTTCCGAGGCCGCCTGGCTGGTTTCCGTCT CTATGGACGGCGTCGCCATGGACCAAGGCTTGGA
Homology of Contig U35_48055 to Model Species (E-value threshold 1e-50)
Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
---|---|---|---|---|
Rice v7 | None | |||
Brachypodium v1_2 | None | |||
Arabidopsis v10 | None |