- Probe CUST_33670_PI390587928
- Source Contig U35_36085
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_33670_PI390587928 | Hv_44K_v2 | CTTCTTTGGTGTTTCTTCAGTTGTTTGCCCGACCACTAGATCTGCTGCTGGGTTGAAATT | 52 | GeneList: cyan MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 2.749 | 1.927 | 1.334 | 0.645 | 0.394 | 0.450 |
| Raw | 515.351 | 478.066 | 345.125 | 243.169 | 54.673 | 69.781 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_44617.1 | 2029 | 9e-22 | 1414 - 1468 | 100 | 55 / 55 | minus | ABC03819 ABC03821 |
| MLOC | MLOC_44617.2 | 1944 | 9e-22 | 1432 - 1486 | 100 | 55 / 55 | minus | ABC03819 ABC03821 |
| JLOC1 | JLOC1_28927.4 | 2154 | 5e-22 | 1313 - 1367 | 100 | 55 / 55 | minus | |
| JLOC1 | JLOC1_28927.3 | 2159 | 5e-22 | 1318 - 1372 | 100 | 55 / 55 | minus | |
| JLOC1 | JLOC1_28927.2 | 2173 | 5e-22 | 1332 - 1386 | 100 | 55 / 55 | minus | |
| JLOC1 | JLOC1_28927.1 | 2196 | 5e-22 | 1355 - 1409 | 100 | 55 / 55 | minus | |
| Harvest21 | ABC03821 | 633 | 2e-22 | 536 - 590 | 100 | 55 / 55 | plus | ABC03821 |
| Harvest21 | ABC03820 | 822 | 2e-22 | 192 - 246 | 100 | 55 / 55 | minus | |
| Harvest21 | ABC03819 | 2186 | 2e-22 | 1408 - 1462 | 100 | 55 / 55 | minus | ABC03819 |
| Harvest35 | U35_36085 | 527 | 3e-25 | 53 - 112 | 100 | 60 / 60 | minus | |
| Harvest35 | U35_47133 | 652 | 2e-22 | 368 - 422 | 100 | 55 / 55 | plus | |
| Harvest35 | U35_14397 | 2191 | 2e-22 | 1413 - 1467 | 100 | 55 / 55 | minus |
Contig Sequence (527 bp)
>U35_36085 527 Hv_44K_v2 GACTCCTATAGGGCGAATTGGGCCNCTTACAAAATGCTCGAGCGGCCGCTAAAATTTCAA CCCAGCAGCAGATCTAGTGGTCGGGCAAACAACTGAAGAAACACCAAAGAAGGGCCTCAT ATCTTATGGCAAGTGCAGACTTAGCAGCAAGTGAACGAGAGATCTTTCCCTTGTGCTTAG GAGCCGCCTGTCCAATTAATGAAGCATGATAGATGAGACCATACTTCGGTGTAGCATGCT TTGTCTTCAGAGCTCTGAACAACGCCTTCTCTGCCCCCAGAATCTGAATCGTGCTGCCAG GTTGCTTGGCCAGATTCATCAAACTACCACCATGTGCAATAAGGCGAGCGCCAACAAGTT CACCAACAAGTGCAGTCAAGTTAGGAGTAATGGTATTCATCCTACTTTTTAGATAGTCAT AGAGCTGGGCTCTGTACTCAGAAAGAGCCAGGACTTGATCACACAGTTCCCTGATGTTCG AGAGGTCAAGCTCATTGACTTCTGTTCCCATGGAAATTACAGCTGCC
Homology of Contig U35_36085 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os03g22740.1 | 569 | 3e-81 | protein|nucleolar protein NOP5-1, putative, expressed |
| Brachypodium v1_2 | Bradi1g18440.2 | 443 | 8e-85 | |
| Arabidopsis v10 | AT3G05060.1 | 533 | 5e-78 | NOP56-like pre RNA processing ribonucleoprotein | chr3:1413174-1415564 REVERSE LENGTH=533 |