- Probe CUST_33662_PI390587928
- Source Contig U35_48065
Probe Details
Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
---|---|---|---|---|
CUST_33662_PI390587928 | Hv_44K_v2 | CAAAGGGATGGAAGTCAAATAGTAGTAATCTCGATGTGTTAAAAACGAAAGTGATCATCA | 42 | GeneList: None MasterList: None |
Probe Values
This probe has no recorded values for this experimentProbe Sequence's BLAST hits in Barley Unigene Datasets
Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
---|---|---|---|---|---|---|---|---|
MLOC | AK354832 | 1560 | 2e-24 | 1480 - 1539 | 100 | 60 / 60 | plus | ABC07697 |
MLOC | MLOC_55352.3 | 2000 | 3e-21 | 596 - 655 | 97 | 58 / 60 | minus | ABC07697 |
MLOC | MLOC_55351.5 | 2313 | 3e-21 | 1478 - 1537 | 97 | 58 / 60 | minus | ABC07697 |
MLOC | MLOC_55352.2 | 4612 | 3e-21 | 1693 - 1752 | 97 | 58 / 60 | minus | ABC07697 |
MLOC | MLOC_55352.1 | 4427 | 3e-21 | 1500 - 1559 | 97 | 58 / 60 | minus | ABC07697 |
JLOC1 | JLOC1_35692.1 | 1995 | 2e-21 | 1341 - 1400 | 97 | 58 / 60 | plus | |
JLOC1 | JLOC1_35691.7 | 4273 | 2e-21 | 1389 - 1448 | 97 | 58 / 60 | minus | |
JLOC1 | JLOC1_35691.5 | 4347 | 2e-21 | 1463 - 1522 | 97 | 58 / 60 | minus | |
JLOC1 | JLOC1_35691.2 | 4014 | 2e-21 | 1492 - 1551 | 97 | 58 / 60 | minus | |
Harvest21 | ABC07697 | 1553 | 6e-22 | 1456 - 1515 | 97 | 58 / 60 | plus | ABC07697 |
Harvest35 | U35_48065 | 508 | 3e-25 | 43 - 102 | 100 | 60 / 60 | minus | |
Harvest35 | U35_17104 | 1579 | 3e-25 | 1481 - 1540 | 100 | 60 / 60 | plus |
Contig Sequence (508 bp)
>U35_48065 508 Hv_44K_v2 TTTTTTTTTTTTTTTTTAGTTAAGAAGCATCTATTGCTTTATTGATGATCACTTTCGTTT TTAACACATCGAGATTACTACTATTTGACTTCCATCCCTTTGTTTGTTGTTAAGCCACCG TCACATTTGTGGTACGGCCTGGCATGGGCTTGCCCTGCAGGAATTGCTGAAACAGTATGA GCGCTTGCCGCGGACGGTGCAGAGGAACCTCATGGCCCGCACCTCTGACGGACACCAGCG TAAGGCCCTTGTACACCTGGCTCCAGCCGCCGACCTGAAGACCCAAATCCTTAGGCCAGC TGCAATCAGCTCCCTGTAGATGGGAAGCATGGACCTCGGAGCATCATGCCAGTGGGTATT AATGGTGTCGCTGCAGGTCGCCCACGTGTAGTTCATGGCGCCGGTGACGTTGGCGTGGAG GGCCGTCTGCACGTCCCGCCGGTTGTAGTACGCCGTCGAGTACCTCTCCGTGCACGGGTC GTACGACCCGGTCAGCCATGGGTAGCGC
Homology of Contig U35_48065 to Model Species (E-value threshold 1e-50)
Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
---|---|---|---|---|
Rice v7 | LOC_Os05g18604.1 | 484 | 1e-54 | protein|OsSCP28 - Putative Serine Carboxypeptidase homologue, expressed |
Brachypodium v1_2 | Bradi2g35197.1 | 464 | 7e-57 | |
Arabidopsis v10 | None |