barSeed - Barley Seed Development Database

Probe CUST_33657_PI390587928

Source Contig U35_50380

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33657_PI390587928	Hv_44K_v2	AGGTTAATACCATGTCCCAGTTTAGCAAAACTTATGTGTTTCATCCGTTTCAGGGAGGAG	165	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.458	1.192	1.209	0.882	0.286	0.293
Raw	95.355	126.804	110.817	131.527	14.284	16.740

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_26933.1	350	7e-23	115 - 174	98	59 / 60	plus	None
JLOC1	JLOC1_18243.1	235	4e-23	113 - 172	98	59 / 60	plus
Harvest21	ABC52491	599	3e-25	166 - 225	100	60 / 60	plus
Harvest35	U35_50380	599	3e-25	166 - 225	100	60 / 60	plus

Contig Sequence (599 bp)

>U35_50380 599 Hv_44K_v2
GGTTGCTTCGCGGTAGATTAATGCAAAAAAATATGATCAACAATATATTGTATTGTCGAT
GTCCAACTATGTGCAGTACTCATGACAGATTTATATAAGAGGGAATAATACCATACAATT
CACGTGTTTTGGATTTGCTGTATCTTGAAGAATATCAAGCAAAAAAGGTTAATACCATGT
CCCAGTTTAGCAAAACTTATGTGTTTCATCCGTTTCAGGGAGGAGTTATGGGTATCTCCA
TTGAGGTTCGTGAAAGCTTGAAGATGCTAGACCATGAAGGTTTCCCTATACTTGGGATAG
AATCGCAGAAAATGCAAAATCCTGATCTCTGTAAGGCAATGGGAAAGAAATCTGACCAAA
AGGGTGTTCGTATCAGAAGAATTGAACCAACTGCTCCTGAATCTAGATGCATGCAACCTT
GTGATATTATTCTTAGCTTTGATGGTATTGAGATCGCCAATGATTTATAGCTTCTGTCAT
ACTTTATACATGTATCTACGTATTATCATTCATTCTTGTTCACTTCACGACACATGTTCA
GTTCTAGCTATAGGTTATACTACTCATTCCAATGAAGTACAAAGTGTTCGTTTTGAGTT

Homology of Contig U35_50380 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None