barSeed - Barley Seed Development Database

Probe CUST_33605_PI390587928

Source Contig U35_7007

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33605_PI390587928	Hv_44K_v2	GCTGTTTAATTTCTGAACCAGGCGTGCAAAGTTGCTAATGTTTATTTTCATTCCAACACT	654	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.774	2.868	1.287	0.752	0.321	0.415
Raw	571.536	958.182	365.223	343.504	49.348	70.912

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_59220.2	2114	2e-24	1480 - 1539	100	60 / 60	plus	ABC14897 ABC38453
MLOC	MLOC_59220.1	1866	2e-24	1353 - 1412	100	60 / 60	plus	ABC14897 ABC38453
MLOC	AK249140.1	1559	7e-23	1293 - 1352	98	59 / 60	plus	ABC14897 ABC38453
Harvest21	ABC14897	941	3e-25	655 - 714	100	60 / 60	plus	ABC14897
Harvest35	U35_7007	941	3e-25	655 - 714	100	60 / 60	plus

Contig Sequence (941 bp)

>U35_7007 941 Hv_44K_v2
ATTGTTGTTGTTCATTGCATTTGAAATTCCATTTACTTTGCCAGCACATTACACTCCTTT
CTCTTGCATCTTATGCAAGTAGCTTTATATTCATGCTTTATTGTACTGTTCTTAAATAAT
TGTTGTCAGTAAATTGCTATTCTCGCCTGCAGCAGTGTGAACCCTTTCAACCTTACATTG
GCAACAATTTTGCTAATTCCTGTTTACCAACTCAGAAACATATGATAGATATGATCATTA
TTGTCTGGTAATCTTTTAAGTAATCTAAACATTGCACACCCTGTTACACCGTGTTGCTTG
TTTCCTGAAACCGAGGTGATTTCTTCAGGCATGCAAAATGAAGCTGGGAGATTTGAAGGG
TGCTTTGTTGGATGCAGATTTTGCGCTGCGTGAAACAGAGGGCAATGCTAAGGCTTTTTT
CCGACAAGGACAGGCACACATAGCACTTAATGACATTGATGCAGCGGTGGAGAGCTTCCA
GCATGCATTGGACTTGGAGCCAACTGATGGAGCGATTAAACGCGAGCTGGCTGCTGCAAA
GAAGAAGATCTCCTACAGGAGAGATAAGGAGCGCAAGGCATACGCCAGGATGTTCCAACC
TTAAGGAAAATCGGAGGAGAACCAAGATGAGAACGGCGAAGTAATTTTCGAGTAGCTGTT
TAATTTCTGAACCAGGCGTGCAAAGTTGCTAATGTTTATTTTCATTCCAACACTTGTAGG
AGAAGGATTGATCCATAGTTTTCTCCGCCCCGGCAGAACTTTTGGTTAGCTTAATCTGGG
ATACATACTTGAACTTTCCGTGGAAAAGGTCGTCGTCCTAGTTAATATGCCGTAAAACAG
AACCTTGTGCTTTTCTCCTGTGGCACAGTTTTGCTGGTGTGCGCCAAAGGATGCTTATGC
GTTGGGAAAAAAAATTGGAGGAATAAAAAAAAAAAAAAAAA

Homology of Contig U35_7007 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None