barSeed - Barley Seed Development Database

Probe CUST_33599_PI390587928

Source Contig U35_7013

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33599_PI390587928	Hv_44K_v2	ATTCGTACCTGTACCTGAAATGGAAAACACTCCCTCTGTTCCTAAATATAAGTCTTTTAA	863	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.712	1.544	1.088	0.774	0.313	0.339
Raw	508.495	706.658	440.643	474.197	70.663	84.062

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK250289.1	2667	2e-24	2601 - 2660	100	60 / 60	plus	ABC14681
MLOC	MLOC_21822.1	1972	2e-24	3 - 62	100	60 / 60	minus	ABC14681
JLOC1	JLOC1_15126.1	1298	8e-25	25 - 84	100	60 / 60	minus
Harvest21	ABC14681	923	3e-25	1 - 60	100	60 / 60	minus	ABC14681
Harvest35	U35_7013	923	3e-25	864 - 923	100	60 / 60	plus

Contig Sequence (923 bp)

>U35_7013 923 Hv_44K_v2
ATGCTGTACACTGAGGACAGCTGCATAATTCGAGAAGGAGACCCCGTGAATGAAATGCTT
TTTGTTATGAGAGGATATCTCGAGAGTATGACGACAAATGGTGGACAGAGCGGATTCTTC
AATTCCAATGTTCTCAAAGGTGGAGACTTCTGCGGTGAAGAGCTCCTCACTTGGGCTCTT
GACCCAGCTGCAGTTTCAAACCTTCCCAGCTCAACCAGGACAGTGAAGACATTGTCTGAA
GTTGAAGCCTTTGTTCTGAGGGCTGATGACCTGAAGTTTGTAGCCACCCAGTTCAGGAAA
CTCCATAGCAAACAGCTCCAGCATACCTTTAGATTCTACTCACAACAGTGGAGAACCTGG
GCCGCTTGTTTTATACAGGCAGCTTGGCACAGATATTGCAGGAAGAAGCTGGAGGATTCT
TTGTTTGAGAAGGAGAAGAGGTTACAAGCAGCTATTGTAAGTGACGACTCTACCAAGCTC
AGTCTGGGAGCGGCACTGTACGCCTCGCGTTTTGCTGGCAACATGATGCGGATCTTACGG
AGAAATGCTACCCGAAAGGCCCGTTTGCAGGAAAGGGTGCCTGCAAGGTTGTTGCAGAAG
CCGGCAGAACCCAACTTTTTTGCCGTTGGAGAGTAATTTTGACATACAATCAGAAAGTCA
CAACCCAACTGGTAAAGTTTGCTCTTGTGCCCTCATCTTCTCTCAGCTCGGCTCAGTTTA
TGACTGATGCTGTACATAGATAGACCGCTTGTCCTGCATCCTTGTGATTTATATGATGCA
ATTCAATGTATTATTGCTTTTCGTTGTCTATACATGTGCTATGTTTGTATATTGAAGGCA
TCTACTATAAGCATTCCACATTTATTCGTACCTGTACCTGAAATGGAAAACACTCCCTCT
GTTCCTAAATATAAGTCTTTTAA

Homology of Contig U35_7013 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g15580.1	499	9e-135	protein\|cyclic nucleotide-gated ion channel 1, putative, expressed
Brachypodium v1_2	Bradi3g09550.1	701	1e-142
Arabidopsis v10	AT5G53130.1	716	8e-91	\| Symbols: CNGC1, ATCNGC1 \| cyclic nucleotide gated channel 1 \| chr5:21537830-21540490 REVERSE LENGTH=716