barSeed - Barley Seed Development Database

Probe CUST_33595_PI390587928

Source Contig U35_7017

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33595_PI390587928	Hv_44K_v2	TTGTCAATCGGAAGCTCATCTAATGTGGAAGGAGGAACTAACGTGGAATGATACGCTCAT	487	GeneList: white MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.093	1.379	1.634	1.533	0.711	0.690
Raw	35.533	76.502	71.159	109.686	17.150	17.906

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK251508.1	1781	2e-24	1183 - 1242	100	60 / 60	plus	ABC21390
Harvest21	ABC18893	568	3e-25	488 - 547	100	60 / 60	plus
Harvest35	U35_7017	568	3e-25	488 - 547	100	60 / 60	plus

Contig Sequence (568 bp)

>U35_7017 568 Hv_44K_v2
CTGCATCTGCTGCTGCCTTGATCATGATGCACAGTAAGGCGCTGCTCATACTCTGCCCTG
ACTTGCTCACCGCATGGAACTCCAGGAAGATGGTGCTGTCCACCAATTTTAATCTTTCAC
ACCTCAAGGATGAGCTGCGATTGTGTGCCTTGATCCTCTCCTACTCGCCAAAGAATGAGA
GCACCTGGAGCCACAGGAGATGGGTGATAAAAAGACTTGCACAACGCCTTCAGGATATGC
CGGAGCTTATAGACAAGGAATCTCTACTAGTAAAAAACATAGCAGAGAAATCAAAGATGA
ACTACCGGGCATGGAGGCATCGGTGCTGGCTTATTCCTTACATGAAAATAAAACAGGTGC
TAGATGAGTTGAACAAGTCAAAAAAATGGACTGAGTTGCATGTTGCTGACAACTGCTGCT
TTCACTACCGCAGGTCCCTGCTGCTTGCATTACTGGATGGTGCAGCGAACGGAAAAGTTT
CCCTTACTTGTCAATCGGAAGCTCATCTAATGTGGAAGGAGGAACTAACGTGGAATGATA
CGCTCATCAGACGCTACCAAGGGAGAGA

Homology of Contig U35_7017 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g49060.3	298	2e-91	protein\|prenyltransferase, putative, expressed
Brachypodium v1_2	Bradi1g74340.3	359	3e-94
Arabidopsis v10	AT1G10095.1	420	3e-65	Protein prenylyltransferase superfamily protein \| chr1:3297478-3300353 REVERSE LENGTH=420