barSeed - Barley Seed Development Database

Probe CUST_3358_PI390587928

Source Contig U35_11880

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3358_PI390587928	Hv_44K_v2	CACACATCTGATTCGAAACTGAGCTGAAATCCGAAAAGAGACACGAACTATAGGGCGAAA	551	GeneList: paleturquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	8.583	5.889	1.562	0.607	0.494	0.462
Raw	118.913	131.783	30.438	18.782	4.514	4.178

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC21912	625	3e-25	15 - 74	100	60 / 60	minus	ABC21912
Harvest35	U35_11880	625	3e-25	552 - 611	100	60 / 60	plus

Contig Sequence (625 bp)

>U35_11880 625 Hv_44K_v2
AAAATGCTCCCAGCAATGAGTACAGTAAGAGGTTGTCATACGGTGGCAGTGCTTGATGAT
AAGATATATGCAATGGGTGGTTATGATGCTGATGCTGGAGCAATGGTGTCCACCGTTGAG
TTATATGAGCCAAGAATGCCGTCATGGGTGACTGTCGAACCAATGAACTACACCAGAGGG
TACCACTCTTCAGCTGTGCTCGGTGGCTCGATATTCACGCTGGGTGGGGTCAAAGGTGAA
GCAGATACAATCTTGGATGTGGTGGAGCGCTACAAGGAAGGCTGTGGTTGGGTGAACACA
GGGATGAAGTCAATCGGCAGAAGATGCTACTGCTCTGCCATTGTTCTCTGACCGACCGGT
ACCTAAGTATCTATCTAAGCTGCTGCTGATGATGATGAGTGAACTGCAAAGCAGACTGTT
AAGACCCTGGGGCCTCTTTGTCTTTGTCTTTGTCTGAATTCAGAAGCCGGTGTCTCATGA
ACCGAGAAAACCGTCGTCGGCTGTCCAGTTTCTCGTTTCTTGTTTTTTCTGGATCTTATT
TCACAATGCAGCACACATCTGATTCGAAACTGAGCTGAAATCCGAAAAGAGACACGAACT
ATAGGGCGAAAAAAAAAAAAAAAAA

Homology of Contig U35_11880 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi4g44780.1	772	3e-57
Arabidopsis v10	None