barSeed - Barley Seed Development Database

Probe CUST_33583_PI390587928

Source Contig U35_3033

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33583_PI390587928	Hv_44K_v2	CGATGTAAACGGACTGCTTACTTGTTATTTACGTATTTCGTGGGCTGTTACACTAAAAAA	1813	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_1553.1	1828	9e-22	26 - 80	100	55 / 55	minus	ABC07115
MLOC	MLOC_1553.2	1795	9e-22	26 - 80	100	55 / 55	minus	ABC07115
JLOC1	JLOC1_949.5	1677	5e-22	1583 - 1637	100	55 / 55	plus
JLOC1	JLOC1_949.4	1843	5e-22	1749 - 1803	100	55 / 55	plus
JLOC1	JLOC1_949.3	1802	5e-22	1708 - 1762	100	55 / 55	plus
JLOC1	JLOC1_949.2	1803	5e-22	1709 - 1763	100	55 / 55	plus
JLOC1	JLOC1_949.1	1531	5e-22	1437 - 1491	100	55 / 55	plus
Harvest21	ABC07115	1884	3e-25	12 - 71	100	60 / 60	minus	ABC07115
Harvest35	U35_3033	1884	3e-25	1814 - 1873	100	60 / 60	plus

Contig Sequence (1884 bp)

>U35_3033 1884 Hv_44K_v2
GTTTTAACGGGGATAGTCAAATCCAGTTGATGAAAAACATATTGAAGTCAGGTCAGTTAC
GATTTCCATCTGATTGTGAGTTGAGCCATGATTGCATTGACTTGTGCAGAAAGTTGCTGC
GAATCAGTTCAGTATTGCTACTTGGTGGGGTGAAGTATTCAGAAGTATTACTGTGATCTA
ACAGACATCTGGTCGAAAATGAATGGTACCATTCAAAATGGAACGCCTTACAGTTGAAGA
GTTTGTGAATCATCCATTTCTCTTTGAACATGCTCCAGAGACAATCTTGAGTCGGACACC
GTCAGACACAAGAGATGGCCTTCCCTTGACGAAAAGCAGTCCAATGAGGCTTTCGAGCCA
AAGTTCTCAAGAAGATTGTATGCCTTTTCCTTTAGATCTGTCAACTGGACAGGAGGAGAG
TCCTGCTCCTGAGAGTAATGCCCCACTGAAATCTTATGGGTTTGCTACTAGTAAAAAGTT
GGATAAAACTTCAGGCCAGAGTCCGTCGAAGCATACANGGTCTGTTCTCCAGATACATTA
TGGGCAATAATTATGCACCTAGCAGTCAGCGTCTGGACCATCCTGGTCAAAGGACCAAAG
AAAGCAAGATTGGTGAAGGACATGGGGCTAAAGGTGTTTATCCAGAAGATTCCCCTATCA
TTGATTCATTAGAGTTTGTAGATCAGGAATATGTCTTTGTGTCTGGACATGCGGAAGGAT
CCTCCTCTTCAACAAGTGCCTCTCTACAGCGCAATTTGCCGGCTAAATATGAGAATCCTT
CTGTATCACCACCAAACTTAGCTGCTCCGAGTGCACCAATGCCAATAAATGGCACTGCAA
TAAACAGGCAACAGTCTGCTGGAACTGGTAGCCTGGACAGTCATTGTTCTCCAATATCTG
GTACTTCACAGGGATCTGCGTACCTGAGTGATGGCTTGGATCAACCACCATCTGATTATC
TGACCAGGATTAGATTATTGGGGCAGTATGCTTCTACCATAGCGGAGTTGGTCAAAGAAG
AGATAAAAGGTGGCAGGCACTTGGAGGCATTCTCGATCCAGCTAATTATTCTTGCAACCT
GGAAGCAAGCAATTCACATATGCAATTCATATGCGGCTTCAGCTGCCAGAGAGAGTCCCT
CACATGATATCACTATGAAGGGGCTTGATACTGACGCTCCCCATTTGCTTGCAAATTCTC
AAATGGCTGATGAAGAATGCACACAGATTGAGAGGCAGTTTCTCACTGAAGTTGAACATG
CGGAAGAACTTGCAAGCACTGTAGGGCAGATACCTGATGCTACAGCGATGCCCGACGCGG
TCGAAATAATATTTCAATATGCACTAGAATATGGGAGGCATGGTGGTGTTGTTGAGATGA
TGGGGAAAGTGGCGACGGCCATGTCGCGGTATACAAAGGCAATATGCTTACTGCGTTTTC
TCCTGATCGAGGCACCATCGCTCGCCCTCAACCCGCCTTTGTCCCTGACTAGATCTGACC
GACACCGACTGCGGACGTACATCGAAGCCCTCAATGCAAGGCTCAGCCAGTTGCAATGCC
CGAGTCACTGACCGCTGCCGGTGGGCCTTCTTGGGGGCTGACTTGTACAATATTCTTTCA
TTTGTACATATATTTGTTGGCCCAAACGAGGGCGTGTAAGATAGCCACGCTAGAGATCGT
GAGATTAGCGTCCGAATGTAGAGGAAATCCAGTGTAATTGCCCAAACTACAATCGTAACG
TGAGGTGTGTGTGCGTGTGTTTTTAACTTATGCATGCTTTACCCTGTACCAATTAAGGCT
TTAGCCATGGTCACGATGTAAACGGACTGCTTACTTGTTATTTACGTATTTCGTGGGCTG
TTACACTAAAAAAAAAAAAAAAAA

Homology of Contig U35_3033 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g16130.1	715	7e-171	protein\|CAMK_CAMK_like_ULKh_APGy.2 - CAMK includes calcium/calmodulin depedent protein kinases, expressed
Brachypodium v1_2	Bradi1g66950.1	705	0.0
Arabidopsis v10	AT2G37840.1	733	4e-54	Protein kinase superfamily protein \| chr2:15851978-15856047 FORWARD LENGTH=733