barSeed - Barley Seed Development Database

Probe CUST_33582_PI390587928

Source Contig U35_3034

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33582_PI390587928	Hv_44K_v2	TTCTTCTTGTTTCAAATAATGGAACTTCCATCTTAAAGATTGCTGACTTCGGGTTTGCAA	392	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK376609	3343	2e-24	611 - 670	100	60 / 60	plus	ABC07115 ABC10807
MLOC	MLOC_19139.1	738	2e-24	265 - 324	100	60 / 60	minus	None
JLOC1	JLOC1_13274.1	741	8e-25	416 - 475	100	60 / 60	plus
Harvest21	ABC07116	1009	3e-25	393 - 452	100	60 / 60	plus
Harvest35	U35_3034	1009	3e-25	393 - 452	100	60 / 60	plus

Contig Sequence (1009 bp)

>U35_3034 1009 Hv_44K_v2
GGGGGAGTACGTGCTGCCTCGTGCCGACGGGTCGGGAGCCTACTCGCAGGTCTGGCTCGG
GAAGCACGTCGCGCGGGGCACCGAGGTGGCCGTCAAGGAGATCGCCATGGACCGCCTCAG
CGCCAAGCTCCGCGACAGCCTCCTCTCCGAGGTCGACATCCTTCGCCGCATCACGCACCC
CAACATCATCGCGCTCCACGACTCCATTAGGGATGGTGGGAGGATATATCTCATTTTGGA
GTATTGTCGAGGTGGTGACTTGTACGCATATCTTCTACGGCATAAAAGGGTTCCTGAAAC
TGTTGCTAAGCATTTCATTCGGCAGCTAGCATGTGGTCTGCAGAAACTTCGTGAAAGTAA
TGTGGTTCATCGGGATCTTAAACCACAGAACATTCTTCTTGTTTCAAATAATGGAACTTC
CATCTTAAAGATTGCTGACTTCGGGTTTGCAAAATTTTTGCAACCTTCTGGTCTAGCTGA
AACACTCTGTGGTTCACCCCTTTACATGGCTCCAGAAGTCATGCAAGCTCAGAAGTATGA
TGCAAAGGCAGATCTTTGGAGCGTTGGTATTATCTTGTATCAACTTGTTACTGGGTCTCC
ACCTTTTAACGGGGATAGTCAAATCCAGTTGATGAAAAACATATTGAAGTCAGGTCAGTT
ACGATTTCCATCTGATTGTGAGTTGAGCCATGATTGCATTGACTTGTGCAGAAAGTTGCT
GCGAATCAGTTCAGTGGAACGCCTTACAGTTGAAGAGTTTGTGAATCATCCATTTCTCTT
TGAACATGCTCCAGAGACAATCTTGAGTCGGACACCGTCAGACACAAGAGATGGCCTTCC
CTTGACGAAAAGCAGTCCAATGAGGCTTTCGAGCCAAAGTTCTCAAGAAGATTGTATGCC
TTTTCCTTTAGATCTGTCAACTGGACAGGAGGAGAGTCCTGCTCCTGAGAGTAATGCCCC
ACTGAAATCTTATGGGTTTGCTACTAGTAAAAAGTTGGATAAAACTTCA

Homology of Contig U35_3034 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g16130.1	715	0.0	protein\|CAMK_CAMK_like_ULKh_APGy.2 - CAMK includes calcium/calmodulin depedent protein kinases, expressed
Brachypodium v1_2	Bradi1g66950.2	674	0.0
Arabidopsis v10	AT2G37840.1	733	4e-122	Protein kinase superfamily protein \| chr2:15851978-15856047 FORWARD LENGTH=733