barSeed - Barley Seed Development Database

Probe CUST_33573_PI390587928

Source Contig U35_3043

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33573_PI390587928	Hv_44K_v2	TTTTCTTTTCTCCTTGTTTTGTGAGCCTTGTGTATATACTCACATACTTACATGAAAAAA	1196	GeneList: None MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.984	1.241	0.991	1.190	0.386	0.445
Raw	182.489	180.278	131.856	248.105	29.083	34.543

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK357013	1400	9e-22	1096 - 1150	100	55 / 55	plus	ABC12093 ABC12094 ABC19324
MLOC	MLOC_53864.1	2013	9e-22	1833 - 1887	100	55 / 55	plus	ABC12093 ABC12094 ABC19324
JLOC1	JLOC1_34628.2	1233	5e-22	868 - 922	100	55 / 55	plus
JLOC1	JLOC1_34628.1	2059	5e-22	1694 - 1748	100	55 / 55	plus
Harvest21	ABC51013	361	2e-22	273 - 327	100	55 / 55	plus
Harvest21	ABC19324	419	2e-22	90 - 144	100	55 / 55	minus	ABC19324
Harvest35	U35_3043	1267	3e-25	1197 - 1256	100	60 / 60	plus
Harvest35	U35_3042	763	2e-22	461 - 515	100	55 / 55	plus

Contig Sequence (1267 bp)

>U35_3043 1267 Hv_44K_v2
TCGAGCACTGTTGGCCGGCTAGCTCCTCTCTCTTTCTCTCTCTCTCTCTCTCTGAGTTTC
CCTCTGCTTCATCAAGCAAGCGAACGACCCACCGCTACTCTGCTTTGGAGAACGGAAACG
AGAAGATGGCCGTCTCTGTCTGCCTCGGCTCATCCCCATCCACTCCTCTGCTGCCGCCGC
TCCTCTTCCTCTTCTTCCTCTTCTGCTCCCTCCCGTCGCTCGCCTCCGCCTGCGACCGCT
GCGCCCGCCACTCCAAGGCCGCCTTCTACACCTCCTCGCTCACCCTCGCCGCCGGCTCCT
GCGGGTATGGCACGGCGGCCGCCTCCTTCAACGGCGGCCTGCTCGCCGCCGCCGGCACGG
CCCTGTACCGCGGCGGCGTCGGCTGCGGCGCGTGCTTCCAGGTGAGGTGCAAGGACAAGA
AGCTCTGCAGCGGTGCCGGCGCCAGGGTGGTCGTGACGGACCGCGCGAGGACGAGGACGA
ACCGCACGGACCTTGTGCTGAGCAGCCCGGCGTTCGCCGCCATGGCCCGCCCCGGCATGG
CCGCGCGGCTCACCAAGCTCAGCGCCGTCGACGTCGAGTACAAGAGGGTGCCGTGCGAGT
ACAAGGGCAAGAACCTCTCGCTGCGTGTGGAGGAGCGGAGCCGCGCGCCGAACAAGCTCG
CCGTCCGGTTCCTCTACCAGGGCGGCCAGACCGACATCGTCGCCGTCGACGTCGCGAAGG
TGGGGTCGTCGAGCTGGAAGTTCATGACGCGGGAGCATGGGCCGGCGTGGAGCACGCGGC
AGGCGCCGGCGGGGCCGCTGCAGTTCAGGGTGGTGGTGACCGGCGGGTACGACGGCAAGT
GGGTGTGGGCCGACCGCGAGGTGCTGCCGCGACGGTGGCGCGCCGGCGAGGTCTACGACA
CGGGGGTCCAGATCACCGATATCGCGCAGGAGGGCTGCTTCCCGTGCGACACCCACGAGT
GGAGGTGAAAGCAAATCGGGGATAGTAAACAAACAAACGATCGCCAACATGGAGCCGAAG
AAGATGCTGCTGCTGGCTCCTCGTTTTGGCCGGGCTACGCACGCACGAAGGATCGCAGCA
CAGCACAGCACCACACCAGACAGGGGAGGTGATTAGTTTAGTTTCACACGAGATGATGAC
TCGTAGCGGTAGCGTCCTGCTGATCCATCGGCAACTTTGGCTGCCGCCTTTTCTTATTTT
CTTTTCTCCTTGTTTTGTGAGCCTTGTGTATATACTCACATACTTACATGAAAAAAAAAA
AAAAAAA

Homology of Contig U35_3043 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g04020.1	280	8e-115	protein\|expansin precursor, putative, expressed
Brachypodium v1_2	Bradi1g76260.1	270	1e-119
Arabidopsis v10	AT3G45970.1	265	2e-77	\| Symbols: ATEXLA1, EXPL1, ATEXPL1, ATHEXP BETA 2.1, EXLA1 \| expansin-like A1 \| chr3:16896238-16897189 FORWARD LENGTH=265