barSeed - Barley Seed Development Database

Probe CUST_33571_PI390587928

Source Contig U35_3045

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33571_PI390587928	Hv_44K_v2	TGACTTTTGTATAGAAATGGATGTGAGCTGTTGTCTGTTGCGAACCCCGGGTTCTGTTGT	2178	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK363680	3035	2e-24	2939 - 2998	100	60 / 60	plus	ABC07401 ABC30922 ABC41631
MLOC	MLOC_65071.3	2285	2e-24	2126 - 2185	100	60 / 60	plus	ABC07401
JLOC1	JLOC1_42791.1	2352	8e-25	2126 - 2185	100	60 / 60	plus
Harvest21	ABC07401	2293	3e-25	2169 - 2228	100	60 / 60	plus	ABC07401
Harvest35	U35_3045	2303	3e-25	2179 - 2238	100	60 / 60	plus

Contig Sequence (2303 bp)

>U35_3045 2303 Hv_44K_v2
CACGTATGTTATGGGCATTGGTGAAGCTGATGCTTTCTCCGAGAGATTGAAGCAGGAGCT
TGTTGCTTTGGAAGCAGCCAATGTCTATCAGTTGCTGGAAAGTGAGCCTTTAATAGAGGA
GGTTTTGCAGGGTATTGACGCTGCTAGTGCAACCATAGATGATATGGATGAGTGGTTGCG
AATTTTCAATCTGAAGCTGAGGCATATGAGAGAAGATATTTCGTCGATCGAATCACGTAA
CAATGGCTTGGAGATGCAATCTGTAAATAATAAAGGACTTGTTGAAGAGCTGGAGAAATT
ACTTGAACGGTTGCGAATTCCGCAGGAGTTTGCAGCATCATTAACTGGAGGTTCATTTGA
AGAGTCACGTATGCTGAAAAATGTTGAGGCTTGTGAATGGTTGACTGGGGCCATTCGCTG
CCTCGAAGTGCCAAATTTGGACCCATCCTATGTTAATATGCGGGCTGTTCGGGAAAAAAG
AGCAGAACTGGAGAAGCTGAAAATAACTTTTGTTCGACGAGCATCAGAGTTCTTGAGGAA
CTACTTCTCTAGCTTGGTGGACTTTATGATAAGTGACAAAAGCTACTTTTCTCAGCGAGG
GCAATTGAAGCGGCCTGATCATGCAGACCTAAGGTATAAATGCAGGACCTATGCTCGACT
TCTTCAGCATTTAAAGAGTCTGGACAAGAGCTGTTTAGGGCCCTTAAGAAAGGCGTACTG
CCATTCTCTTAACTTGCTACTTCGTCGAGAGGCACGTGAATTTGCAAATGAACTTCGTGC
AAGTACGAAAGCACCAAAAAATCCAGCTGTTTGGCTTGAAGGTTCTAATAATGCTGGCCA
GAATGGCAATAGTGCTGATACTTCAACAGTATCTGATGCATACTCAAAGATGCTTACGAT
ATTTATCCCGCTGCTTGTGGATGAGAGTTCCTTTTTTGCACATTTTATGTGTTTCGAAGT
ACCTGCACTTGTTCCAGCTGGTGCTCCTAACGTCAACAAGCGTAGATCTGGAGCAAATGA
GCCTGATGATGACGACCTGAGTCTTATGGATCCGGATGGCAATGATATCAAACCAGATAA
TACATCTGTGGAGTTGGGTACATTGAATGATGCTCTTCAAGAACTGCTCGATGGAATCCA
GGAAGACTTCTATGCAGTTGTTGATTGGGCGTACAAGATTGATCCCCTGCGTTGCATTTC
GATGCATGGTATTACAGAACGTTACCTTTCTGGTCAGAAAGCTGACGCTGCAGGCTTTGT
TCGCAAACTACTTGATGACCTGGAGTCAAGAATATCAGTACAGTTTAGCAGGTTCATCGA
TGAAGCGTGCCATCAAATTGAGCGTAATGAAAGAAATGTGCGTCAAACAGGAATTCTAGC
CTACATCCCGAGATTTGCTGTCCTTGCATCACGGATGGAGCAATATATTCAAGGGCAATC
TAGAGATTTGATTGATAAAGCATACACAAAGCTAGTTAGCACAATGTTCACAACTTTGGA
GAAAATCGCACAAAGTGATCCTAAAACTGCGGATATTGTACTGATCGAGAATTATGCTGC
TTTCCAGAACAGTCTTTATGACTTGGCTAATGTTGTGCCAACTCTTGCAAAGTTCTACCA
CCAGGCCAGCGAATCCTATGAACAAGCTTGCACTCGCCATATCAGCTCACTCATTTATCT
TCAATTCGAGAGGTTGTTTCAGTTTTCTCGAAAAGTCGATGAATTGACATACACAATAGC
TGCTGAGGAGATCCCTTTCCAGCTTGGGTTGTCAAAAACTGATCTAAGGAGGGTGCTGAA
ATCAAGTTTGGCTGGGATTGACAAGTCGATTGGCGCCATGTACAGAAGATTACAGAAGAC
ATTGACTTCTGATGAATTGTTCCCCTCACTATGGGATAAATGCAAGAAAGAGTTCCTGGA
CAAGTACGAGAGCTTTGTCCAGATGGTGACGCGGATCTACGGGAACGAGCCTATAATGCC
GGTTGCCGAGATGAGGGACACCCTCGCTAGCTTCTAGATACAATTGAGTACAGCGCAATG
TATCATTTTCACAGTGCCGTGGCCCTATCTATATTCAATTCATTCTATTGAATTTTGCAG
ATTCATCGCCTTTCTCTAGGCCTTGTTAGGATGGGTTCTACATGTATGTTTCCTTGTCAA
ATTGTATGTGTGTGTGACTGACTTTTGTATAGAAATGGATGTGAGCTGTTGTCTGTTGCG
AACCCCGGGTTCTGTTGTGGCAAAGGAGTATGAATGAATGGGTAACAAGTTTGGGAAAAA
AAAAAAAAAAAANANNAAAAAAA

Homology of Contig U35_3045 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os03g42750.1	889	protein\|roothairless 1, putative, expressed
Brachypodium v1_2	Bradi1g14450.1	892
Arabidopsis v10	AT1G47550.2	888	\| Symbols: SEC3A \| exocyst complex component sec3A \| chr1:17457171-17463896 FORWARD LENGTH=888