barSeed - Barley Seed Development Database

Probe CUST_33560_PI390587928

Source Contig U35_3056

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33560_PI390587928	Hv_44K_v2	TAGCGAAGAATGCTTCGCTCTTTCAGAATTTATACTTGTTAAGTGCGTTCCTTATTCGTT	830	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_39431.1	1384	3e-22	186 - 241	100	56 / 56	minus	ABC09052 ABC26057
JLOC1	JLOC1_25707.1	2455	1e-22	1032 - 1087	100	56 / 56	plus
Harvest21	ABC09052	950	5e-23	831 - 886	100	56 / 56	plus	ABC09052
Harvest35	U35_3056	948	3e-25	831 - 890	100	60 / 60	plus

Contig Sequence (948 bp)

>U35_3056 948 Hv_44K_v2
CGGGCTGCAGGAATTCTGCACGAGGCACCAACGACCTCGACCTCGACGCCGACGGCAACG
TCTACTTCACCGACAGCAGCGTCCTCTACCAGAGAAGGCATTTCATGCAGTTGGTTTTCT
CTGGAGATGCCTCTGGGAGGCTCTTGAAATACAATCCACAAACAAAGGAAACAACAGTCC
TTCACCGCAACCTCCAATTTCCCAATGGAGTGAGCTTAAGCAAGGACGGTTCATTCTTCG
TCTTCTGTGAAGGATCTCGTGGAAGGTTGAGCAGATACTGGCTGAAAGGTGAGAAGGCAG
GAACCGTCGATCTCTTCGCCATCCTGCCTGGGTTCCCGGACAACGTGAGGACCAACGACA
AGGGCGAATTCTGGGTAGCAATCCATTGCCGGCGCAGCGCATACGCCCGGCTCTTGAGTC
ACCGCGTGCAGCTGAGGAAGTTCTTGCTCAGCCTCCCGATCCCCGCCAAGTACCACTACC
TGATGCAGATCGGCGGCAACCTGCACGCGCTGATCATCAAGTACAGCCCCGAGGGCGAGG
TGCTCGACATCTTGGAGGACACTAAAGGGCAGGTGGTGAGAGCCGTAAGCGAGGTGGAGG
AGAAGGATGGCAAGCTTTGGATAGGATCCGTTCTCATGCCCTTCATTGCCGTCTTTGACT
ATGCCAAGGAATCTGGGTAATAAGGTACGAAATCCACGAATGCCGTTAGAAACTCATTGC
TTGGTCCAAATAAATTTAGTCTTGGAAGCAACCTAGAGTTGCTTGATGTTTCAGCCTTTT
CGTAGTAGTATCTGTAACTCACTGACATTTTAGTTTGTCCCTGGGGTCACTAGCGAAGAA
TGCTTCGCTCTTTCAGAATTTATACTTGTTAAGTGCGTTCCTTATTCGTTAAAAAAAAAA
AAAATGTTTCAATTTCTGGCCAATTCAGAATAAAAAAAAAAAAAAAAA

Homology of Contig U35_3056 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g53950.1	481	2e-136	protein\|strictosidine synthase, putative, expressed
Brachypodium v1_2	Bradi1g08480.1	398	6e-147
Arabidopsis v10	AT1G08470.1	390	8e-103	\| Symbols: SSL3 \| strictosidine synthase-like 3 \| chr1:2682262-2683977 REVERSE LENGTH=390