barSeed - Barley Seed Development Database

Probe CUST_33549_PI390587928

Source Contig U35_3067

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33549_PI390587928	Hv_44K_v2	TTTCAACATTGAATGCTGGCCTGGCCTTTTGGTGTTTGCGCATGGAGATGGTATGCAAAT	3413	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.369	1.499	1.268	0.895	0.368	0.390
Raw	20139.633	35355.630	25727.300	28029.810	4137.377	4727.857

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_4555.1	3512	2e-24	430 - 489	100	60 / 60	minus	ABC08654
JLOC1	JLOC1_2851.2	3656	8e-25	3154 - 3213	100	60 / 60	plus
JLOC1	JLOC1_2851.1	3633	8e-25	3131 - 3190	100	60 / 60	plus
Harvest21	ABC08654	2219	3e-25	2137 - 2196	100	60 / 60	plus	ABC08654
Harvest35	U35_3067	3496	3e-25	3414 - 3473	100	60 / 60	plus

Contig Sequence (3496 bp)

>U35_3067 3496 Hv_44K_v2
GGGGAAGGGGACGAGGAGGAGCCGGAGCCCACCGACGACGACGAGGCCGAAGAGGACACC
TCTGGAAACCCAGTGGTAGGGAAGCAGGAACGGGCCAGGCTCAGACAACTCCAGAAACTG
AAGAAGCAGAAGATCAAAGAGATATTACAGACCCAGAATGCTGCCATCGATGCTGACATG
AACAAGAAAGGGCAAGGGCGGTTGAAGTACCTACTGCAGCAGACAGAGATATTTTCCCAC
TTTGCAGATGGAAGCAAGCCTAAAGATAAGAAGCCACGCGGAAGGGGTCGCCCTTCGACA
AAGAGGGCAGTAGATGAGGAAGATGAAGAGTACCTAGAGGAGGAAGATGCACTTGGTAGT
TCAGGCGGAACACACTTGCTTGTGCAACCATCATGCATAAATGGACAAATGCGAGATTAC
CAACTAGCTGGGCTTAATTGGCTCATACGGCTGTATGAAAACGGCATTAATGGAATATTG
GCTGATGAGATGGGTCTTGGGAAAACTCTTCAAACTATTTCACTGATGGGTTATCTGCAT
GAATACAGAGGAATAACTGGTCCTCACATGGTTGTTGCACCAAAGTCTACTCTTGGTAAC
TGGATGAATGAAATTGCTCGTTTTTGTCCCATTTTGCGTGCTGTGAAATTCTTGGGAAAT
CCAGAAGAGAGGAATCATATAAGGGAGAACTTGCTACAGCCAGGAAAATTTGATGTGTGT
GTGACCAGTTTTGAAATGGCAATCAAAGAAAAAAATGCATTGAAGCGTTTCAGCTGGCGC
TACATTATTATTGATGAAGCTCATCGGATAAAAAATGAGAACTCTCTTCTGTCTAAGACG
ATGAGGCTTTTTAGCACTAACTATCGTCTACTCATCACAGGCACTCCACTCCAGAACAAT
CTCCATGAGCTTTGGTCTCTACTCAATTTCTTGCTGCCTGAGATATTTAGTTCTGCAGAG
ACCTTTGATGAGTGGTTCCAAATTACCGGTGAAAATGATCAACAGGAGGTTGTTCAGCAG
CTTCATAAGGTTCTTCGCCCATTTCTTCTCCGGAGGCTTAAATCTGATGTTGAAAAGGGT
TTGCCTCCAAAGAAAGAAATTATCCTTAAAGTTGGAATGTCTCAGATGCAAAAGCAGTAC
TATCGAGGTCTGCTTCAGAAAGATTTGGAGCTTATTAATGCTGGTGGTGAACGTAAAAGG
TTGCTTAACATAGCTATGCAGCTACGAAAGTGCTGCAACCATCCATATTTATTCCAGGGG
GCAGAACCGGGCCCACCTTACACAACTGGTGACCATCTTGTTGAGACTGCAGGGAAAATG
GTTCTGTTAGATAAATTGCTGCCCAAATTGAAGGACCGCGACTCCAGGGTGCTTATTTTC
TCACAGATGACCAGGCTTTTGGATATCTTGGAAGATTATCTTGTATACAGAGGGTATCAA
TATTGCCGAATAGATGGAAGTACAGGTGGAGATGATCGTGACGCATCCATTGATGCATTT
AACAAACCAGGAAGTGAGAAGTTTGTTTTCTTGCTTTCAACCAGGGCTGGTGGACTTGGT
ATCAACCTTGCCACTGCTGATGTTGTGATTCTTTATGATAGTGACTGGAATCCACAAGCT
GATCTTCAAGCTCAAGACCGTGCACATAGGATAGGTCAAAAGAAAGAAGTCCAAGTTTTC
CGATTTTGCACCGAGTATACCATTGAGGAAAAAGTGATTGAGAGAGCGTACAAGAAGCTT
GCATTGGATGCTTTGGTTATTCAACAAGGACGATTGTCAGGGCAGAAAACTGTCAATAAG
GATGACTTATTGCAAATGGTTAGATTTGGTGCGGAAATGGTGTTCAGTTCGAAGGATAGC
ACAATAACAGATGAGGATGTTGACAGAATTATAGCTAAAGGAGAAGAGACAAAAGCAGCG
CTGGATGCAAAAATGAAAAAATTCACAGAGGATGCCATTAAGTTTAAAATGGATGACACT
GCTGAATTGTATGATTTTGATGGTGATAAGGAGGAAGACAATGCTGATTTCAAGAAAATT
GTTGCTGAGAATTTGGTGGTCGAGCTACCTAGGAGAGAAAGGATAAAGAGTTACAATGAG
TCTGAATACTTCAAGCAAGCACTTCGCCAAGCAGCACCAGCTAAACCCAAGGAACTACGG
ATTCCAAAAATGCCAACTTTGCATGACTTCCAGTTCTTCAACAGTCAAAGGCTAAATGAG
TTGTATGAAAAGGAAGTCCGATACCTCGTGCAAGCCAACCAGAAGAAAGATACCACTGAT
GGTGAAGATGAAGATCAGTTGGAGCCTTTTACTGCAGAGGATGAGGCGGAGAAGAAACAG
TTATTGGAAGCGGGTTTTGCAACATGGGCTAAGAGAGACTTCAACACATTTATTCGTGCA
TGTGAGAAATATGGTCGCAATGACATGAAGAGCATATCCTCTGAAATGGAAGGGAAATCA
GAAGAAGAGGTTCAACGATATGCTGAAGTTTTCAAGGAGAGATACAAGGAACTGAGTGAT
TATGAAAGAATTATGAAAAACATTGAAAGGGGTGAGGGAAGGATAAATCGCAAGGATGTG
ATTATGACAGCCATTGGGAAGAAGTTGGACCGCTATAAGAACCCATGGTTAGAGTTGAAA
GTTCAGTATGGCACAAGCAAAGGGAAGTTCTATACCGAGGAATGCGACCGTTTTATGCTA
TGCATGGCACACAAGCTTGGTTACGGGAAGTGGGATGAACTTAGAGCTGCCTTTCGCAAG
TCACCCTTGTTCCGATTTGACTGGTTTGTGAAGGCGAGAAGTGCGCAAGAGCTGGCTAGG
CGATGCGACACGCTTGTCCGCCTAATTGAGAAAGAGAATCAAGAATACGATGAGCGAGAA
AGGCAGGCACGGAAAGAGAAGAGGCTTGCTAAGAAGATGACGCCAACAAAGCAGAAGATG
ACGCCAACAAAGCAGAAGATCACTCCAACAAAGCAGAAGATGACTCCAACAAAGGAGAAG
AAGACTCCAACAAAGGGAGCTGCATCGAAGGTTTCAGACGGCCAGACGGCTCCAGCGGCT
TCATCCAAGAAGAAGATGACACCAACAAAGCAGAAGATGACACCTTCAAAGCGAGCCGCA
TCCAGGGTTTCAGACGGCGAGACGGCTGCTCCAGCGACTTCATCCAAGAAGCGACGGCAG
TCCCTCATGGACGACTTTCTGGGCTCGGGAAAGAAGGGAAAGGCGTAGGCGTGGGTGATC
CATCCGGTGTTGCCTTGTCAGGAGACGCTTTGGGCTCGGCTTCTTCCAGCGCTTGAAGCC
TCTTATCTTAGTGTAGTATATGCTTGATGAATCGTCGGTTAGGTTAAATCTCTATCCAAG
TAAGTTTAATGCTTGTGTTGCGGGGACACCTGTAGTGGGTGCATCAGGATCGGTTTCAAC
ATTGAATGCTGGCCTGGCCTTTTGGTGTTTGCGCATGGAGATGGTATGCAAATGACTGCA
AAAAAAAAAAAAAAAA

Homology of Contig U35_3067 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os01g27040.1	1108	protein\|chromatin-remodeling complex ATPase chain, putative, expressed
Brachypodium v1_2	Bradi2g12950.1	1100
Arabidopsis v10	AT3G06400.3	1057	\| Symbols: CHR11 \| chromatin-remodeling protein 11 \| chr3:1941066-1946700 FORWARD LENGTH=1057