barSeed - Barley Seed Development Database

Probe CUST_33547_PI390587928

Source Contig U35_3069

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33547_PI390587928	Hv_44K_v2	GACATGTAGTACTTGTTTGACTTTTCGGTTTTGACATGGATAAAGCTTGTTCTGAATCAA	2819	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_57704.2	3876	2e-23	3701 - 3758	100	58 / 58	plus	ABC08681 ABC18066
JLOC1	JLOC1_37434.1	2808	1e-23	2563 - 2620	100	58 / 58	plus
Harvest21	ABC08681	738	4e-24	111 - 168	100	58 / 58	minus	ABC08681
Harvest35	U35_3069	2987	3e-25	2820 - 2879	100	60 / 60	plus

Contig Sequence (2987 bp)

>U35_3069 2987 Hv_44K_v2
TCCTAATCCAAACCTAACTCCCGGCGATCTCTCCTTGCCCTGATCCCCACCGCCGCAGAT
GTCGTCGGAGCCGCCGCCCGCGGAGCCCTCCGAGGCCGCGGAGGCGGCCAGGCCGTCGGC
ATCCCCGCCGAAGGAATCGGAGCCCGCCGCCGCGCCAGGGGCCGCCCACGAGACGAACAC
GTTGTGGGTCGGCAACCTGCCCACGCACGCGGGCGAGGACGACGTCATGGCGGCCTTCGC
CCCGCACGGGGCGCTCGACTGCGTCGTCATGCGCGCCGGCTCCCGCAGCTACGCCTTCGT
CCTCTTCCGCTCCGTCGACGAGTCCCGGGCCGCCCTCGAGGCGCTTCGCGGGTCGAAGGT
CAAGGGCTTGCCCATCCGGGTCGAGTTCGGCCGGCCGGCTAGAGCTGTTAGGAACCTATG
GGTTGGAGGAATTAGTCCGTCTATTTCAAAGCAAGAGGTAGAGGATGAGTTTCAAAAGTT
TGGGAAGATTGAAGGCATTGCATTCTCTCATGATCAAACTTCTGCATACATCGATTTTGA
GAAACTGGAGGATGCCATTTCTGCCCATAGAGCCTTGAATGGGACTGATTTAGGGGGCAA
GGAATTGTGTGTTGATTTCCAGAGGTCCAGAGGCAGAGTGGAACGGTCGGAAGCAGGCAA
CTTTAATGGTAGAGGATCATTGCCACCTGGTGAAATGGGAGTTGGACATGCAAAGGGTTC
TGCTGGAGTACGAATGCGAGAGGCAAAAAATCCTACCAATGTTCTCTGGGTGGGTTTACC
CAATACACATAAAGTTAACGAGGAGACACTAAGGCGGGCTATGGCAGCACATGGTGTGGT
TACAAACGTCAAAGTTTTTCCAGAAAGGCAGTATGCTTTTGTGGAGTTTGCAACGATTGA
AGGAGCTTCTAATGCTAAGAATCTTCTAGATGGACGTCTGTTCAATGATACCAGGATTCA
TGTTCTTTTCTCCAGCAGTGGGCTTGGGCCCAGTAAACTTGATAACCTAACACCGCCTGC
TGGGTTCCCTAGATCAGAGATATACCATGATAGTCCATATGCCGCACCTGATTATTTTGG
TGCTGGTCGCAGTAGTTATGGCACATCACAGGGGTATGATCCTCGACGTGGAAGATCAAG
ATACTTGGACTATGGTGCAATGCCAGTCACTGGTGGTATCCTTCCAGCACCTGAAGCTGG
CTCATCTGTGTTGACTGGACATTCTGCTCATAATGCACTTGATCCGAGAGAAGCCAAAAG
GGTGAGGTTGAATGCTGGCATGGACCCTTACCATGTAAGGGCAGGCAGTGAGGGTCTTCA
ACCGGTTGCTGACGAGAGCTTAAGCTCTGTTATTCGGATCCAGGGCATGGTACACCAAAC
GTCTTGCCTTGGGCACTTCTGGCGTGGCAGTATTGCCAAAGGTGGATCTCTTGTTTGTCG
TGCTCGCTGCTTATCTATAAGGAGGGGCGTTGAGATACCTTTACCGGACATTGTTAATAT
CTCTGCTAGAACAGGATTAGATATGCTGGCAAAACACTATGGAGATGCTTCGGGTTTTGA
AATTGTCTTCTTCTTACCAGACAGTGAAGATGATTTTGTGTCTTACACTGAATTTCTGCG
GTACTTGGGCTCAAAAAGTCGCGCAGGGGTTGTTAAGGTTGATGCAGGAACCACTTTGTT
TTTGGTCCCGCCATCGGATTTCCTGACGAATGTTCTGCAAGTTGATGGTCCAGAGCGCCT
TTATGGCGTGGTACTGCACATTCCACAGATGTCCAATGCTGCTGTCCAGAGACCAGTACT
AACTGGACCAGAGTCACAAGCTTATTATGATGGCAGTGATACCATGCTAGCGATGCAAAG
AAATTACAATATGGGCTCTGCTAATGACAACCATCATCAGGATGCCGATTATCGGAGATC
TTTACGTGAGGAAGCAGTTCAGTCAGGTGTGTCAAGCTTTCCCATGAGCCAAATAGCAGG
ACAGCAAGGACAGTCACTCAATCCTGATATTATGACCACAATAGCTAAACTTATGCCAAA
TGTGCAGTCAACAGTTCCAGCAAATAGTCAGGTGGGTAATCTTCAGCAATCCGGTCAGCA
GTTTGGCAGGCAAGCTGCAGCAAGCTACGGGGGCATGGTCGGTGCTCAGGAGCAGCACCC
AACACATACTGCTTACAACCCTGAGGTTACCTTAAGCTTGCCTCCACCACCTCCTCTACC
TACACAAGCACCCGTGCCTGCTCTCCATACACAGCAGCAGTATCAACCCGAACACTATTA
TGCTCCTCAAAACAATTACGGTTCCTTAGGAACAGCTGGCCAGTCTAACCTCCAGGCCAG
CAATGCTAACCTCCCTGGCCCACCCCCGCCCCAATTGAACAACGGGCCTTTGGCAGCAAA
TAACCAGACGGGAAATTTGGCGCAGCTCCATCAGTCAATGTCATTCCCCACTGATAGGGT
AAGCCCAGATTTCTCCTCTCAGGTACAACAGCAACAAAATGTTGCTTCTGGTTCTGCCCA
AGCTCCTGACGAGGTGGATAAGAACAAGAAGTACCAGGCGACCCTCCAGTTTGCGCACAA
TTTATTGCTTCAGCTACAACGTGGATCTGGAAATCAATCTTGATGATGAGTACTGCTTCA
GGTACTCTCTCGACGGCTCCTCCACTGCAACGCAACTGAATCGGCCCATGGTGGTGTTGG
CGGTTATTTTCTCTCGACGCGGAATCGGTTGCTACCTACCGAACTTCTTTCTAGGCATCA
GATATTTTAGCTTTGAGCTGTATAATCGTTTGTCTTTGTGTATGCGGCCTCCTTGGCATG
ACATGTAGTACTTGTTTGACTTTTCGGTTTTGACATGGATAAAGCTTGTTCTGAATCAAA
AAAAAAAAGTGCTTTACTCTCTTATTTTTGCTTTTTTTTGGGGGGGAGGGGGTGCAATCA
TGAAATTTACACTGGAAGGAGAACTCAAATAAAAAAAAAAAAAAAAA

Homology of Contig U35_3069 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g34070.1	901	0.0	protein\|RNA recognition motif containing protein, expressed
Brachypodium v1_2	Bradi4g35250.4	876	0.0
Arabidopsis v10	AT2G43410.2	901	2e-119	\| Symbols: FPA \| RNA binding \| chr2:18026397-18030989 REVERSE LENGTH=901