barSeed
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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_33541_PI390587928Hv_44K_v2CCAGGGATAGTGGCCTTAAACCAGCTGAAGGATGTATACCTGCCCGGAAAAAAGAAAAAA2524GeneList: blue
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 1.7981.5621.1310.9490.4470.466
Raw 930.2771264.651806.1291042.372176.930198.470



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
Harvest35U35_307525913e-252525 - 258410060 / 60plus



Contig Sequence (2591 bp)

>U35_3075 2591 Hv_44K_v2
CTCCCTCTCACGCTAGCCCCGCAAATCGAGGCCTTCCGCTGGCCCTCACCCCCGCCCCGC
CACCAGGCTCACCCCAGCCAGCCAACGGAGGCGACGAGCGCCCGGCCCGCGGCGGCACTC
TCCCGCCCGCCCGCGCACGGGATCCGCGACGATCCGTGCGTCCCAGCAGAACTAGGATTT
TCTGTGGTCCTTCATGAATCTTGAGGACAGTCTATACTAGGGGGGCAGTAGGGTACTACT
ACTACTAGGATTTGGGATCCTCCGAAATGAGGGGGAGAAATGATGGGGGGCAGAGCAAGA
GGCCCGTTGTGCTCTTCTGCGTCATGGTCGTGTGCCTGTGCCTCCTCTTCCTCTATTTCT
CGGGCTCCAATGGCCAGGCCGGGAGCGCAGCACTAGAGTACGGCACCAAGTTCTCTCGGT
CGCTTGGGTGGGGCAGTGACGGAGATGGTGACGATGGCTCGGAGGAGTCAATTTTTGGGA
CTGGCGATGCAAACGATGTTAAGCTCAAGAGCTTCCCCGTATGTGATGATCGGCATTCTG
AGCTGATCCCCTGCTTGGATAGGAACTTGATATATCAGATGAGGTTGAAGCTGGATCTAA
ACCTGATGGAGCATTATGAGCGGCATTGTCCTCCTCCTGAGAGGCGCTTTAATTGCCTCA
TTCCACCGCCACATGGCTATAAGGTTCCCATAAAATGGCCAAAAAGCCGTGATATAGTGT
GGAAAGCAAATATTCCTCACACTCACCTTGCAAAAGAGAAGTCAGACCAGAACTGGATGA
TTGATGCAGGCGAAAAAATTAAGTTTCCTGGTGGCGGAACACATTTTCATCATGGAGCTG
ACAAATATATATCAAACATTGCAAATATGCTAAACTTCAAAGATAACATTATAAACAACG
AGGGAATGCTTCGTACAGTACTTGATGTGGGTTGTGGAGTGGCTAGTTTTGGAGGATATC
TTCTTTCATCCAATGTCATAGCCATGTCTTTGGCACCAAACGATGTACATCAGAACCAGA
TCCAATTTGCTCTTGAAAGGGGGATCCCTGCATATCTTGGTGTTTTGGGAACAAAAAGAC
TTCCATACCCCAGTAGATCGTTTGAATTAGCCCACTGTTCTCGTTGCAGGATTGATTGGC
TTCAAAGAGATGGAATTCTTATGCTTGAACTGGACAGATTACTCAGGCCTGGAGGTTATT
TTGCTTATTCATCTCCTGAGGCATACGCACAGGATGAGGAGGATCGTAGAATCTGGAAAG
AAATGAGTTCCCTTGCAGAAAGGATGTGCTGGAAAATTGCAGAGAAAAAAAATCAGACAG
TTATTTGGGTCAAGCCTCTGAACAATGATTGCTACAGGAGCCGACCGCGTGGTACAAATC
CGCCTCTATGCAAAAGCGGTGATGATCCAGATTCAGTATGGGGAGTGACAATGGAAGCTT
GCATTACTCCATATCCAGAACAAATGCACAGGGATGGGGGAAGTGGATTGGCTCCTTGGC
CTGCCCGATTAACAACCCCACCTCCTCGCCTTGCAGATTTGTATGTTACAGCTGACACAT
TTGAAAAAGATACGGAAATGTGGCAGCAAAGAGTAGATAATTACTGGAATTTATTGCGCC
CAAAGATAAAACCAGAGAGTATTAGAAACATCATGGACATGAAAGCAAACTTTGGATCAT
TTGCTGCTGCTCTCAAGGAAAAAGATGTATGGGTGATGAACGCCGTGTCCCATGATGGAC
CAAACACTCTTAAGATAATCTATGACAGAGGGCTCATAGGCTCTACACATGACTGGTGTG
AGGCATTCTCTACTTATCCTCGAACGTATGATCTTCTGCACGCGTGGACAGTCTTCACCG
ACCTTGAGAAAAGAGGTTGCAGTGCTGAAGATCTGCTCCTTGAAATGGATCGTATACTCA
GGCCAACTGGTTTTATCATCGTGAGAGACAAGGCCCCTATCATTGTATTCATCAAGAAGT
ACCTCAATGCACTTCACTGGGAGGCAGTAACTGTTGTGGATGGCGAGTCCAGTCCGGAAT
CTGAGGAGAACGAAATGATACTCATAATCAGAAAGAAATTGTGGCTACCAGAAGGAGGTT
CACAAGACTCGACGTAATCATTTGATCTGAGTTTCTTTGGCACCGTCAGCATCTGCAGCT
CAGGAGCCAAGAAGTGAAGGCTCAGCCGCTGCTCCCTTGAATACGCGATTCAGTATTGCT
GCTCCAGAAATAGAATTCTCAGCCTCAGCCCTACTATCCACGTGAAGATAGAATGTTTCT
CAGGATATGGCTAGTGTCCGGAAGGCTAAGCTCAAGTCCTCTCTCCTTTTGTTGTCTCCA
CAGATACTGTAATCGTCGGTTAATGTTTGTTCTCTAGCCTGGTTAGGAAATAAACCTTTT
TCTTGTTGAGCTTCAGTTAGGTGCTTCCCGTCTATTTGTTGAAGTGGTGTTTAGTAAACA
GATTTGGTGCTTATTGTAAGAGAAGATTAAACTGTAAACATATTTTGGGGGAAATGAGGT
TTAGCCAGGGATAGTGGCCTTAAACCAGCTGAAGGATGTATACCTGCCCGGAAAAAAGAA
AAAAAAAGGGC



Homology of Contig U35_3075 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os10g33720.36180.0protein|methyltransferase, putative, expressed
Brachypodium v1_2Bradi3g28770.36170.0
Arabidopsis v10AT1G04430.16230.0S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr1:1198860-1201301 FORWARD LENGTH=623