barSeed - Barley Seed Development Database

Probe CUST_33532_PI390587928

Source Contig U35_10981

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33532_PI390587928	Hv_44K_v2	AACTGGCTAGTCCCAGTATGCACTAAATCATCTTGAGCCATATGGTCTTTTCTCTTCAAA	348	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK374164	1920	2e-24	1759 - 1818	100	60 / 60	plus	ABC25658
MLOC	MLOC_70506.2	2297	2e-24	1806 - 1865	100	60 / 60	plus	ABC25658
Harvest21	ABC25658	458	3e-25	349 - 408	100	60 / 60	plus	ABC25658
Harvest35	U35_10981	458	3e-25	349 - 408	100	60 / 60	plus

Contig Sequence (458 bp)

>U35_10981 458 Hv_44K_v2
ACGGCTCAGACCGCGCTGGCATGTTGTATCCTGGGAAATGCTTGTGTTCTTAAGCACATG
ACGTTACAGCCCTGGATCGCGATCAGGATATGCCCTTATGCTGACCTGATGAATATTGGC
GTTGAGAGAAGATTTCTACTAAGGGTTCGCAAGTGGGCACGACTCACCTCGGAGCGCTTC
GGTAAGGTGATCACCGTCTTAGACGGCTCTTCAGAGTGAGTAAGCCTATATCATTTCCCC
ATCTGTCTACTATCAAATGATCTTGTCGTGCGCTTGTTTTCTATGTGTTATTCAGGCTGT
AGCTGGTGTATTGTGTTATCTGTTTGGATGGATACTGTTCTACTGTTGAACTGGCTAGTC
CCAGTATGCACTAAATCATCTTGAGCCATATGGTCTTTTCTCTTCAAAAAAAAAGAAGAA
AAGAACGGCAACCCTTTATTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_10981 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None