barSeed - Barley Seed Development Database

Probe CUST_33530_PI390587928

Source Contig U35_10982

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33530_PI390587928	Hv_44K_v2	AACAACAGAAACTCCTGAACTTGTATGGACACCTGCAATGGCAGCTTCTCTTTCTGCTCA	598	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_5314.1	3180	2e-24	1609 - 1668	100	60 / 60	plus	ABC09751
JLOC1	JLOC1_3409.1	3407	8e-25	1838 - 1897	100	60 / 60	plus
Harvest21	ABC23680	985	3e-25	599 - 658	100	60 / 60	plus
Harvest35	U35_10982	985	3e-25	599 - 658	100	60 / 60	plus

Contig Sequence (985 bp)

>U35_10982 985 Hv_44K_v2
TTTGAAAGGGCAGTATATATGAAACTGGCGGAGATTGTGAAGTTATTACGAACCTCAGAA
GTGGGTTAACATCGCTTCAGAATCTTCTGACAAGTAATCCAGGCTTGGCTGCTGTTTTTG
CTTCCAAGGAACGATTGACACCTCTATTTGAATGCCTTGCGCTGCCTGTTCCTCCTGAAA
GCAATATCCCACAAATTTGCTTAAGTGTGCTTTCTCTCTTGACAAAGCATGCTCCTTGTT
TGGAGGCCATGGTCGCAGAAAGGACGAGTCTCATTTTGCTATTTCAGATACTACACTGCA
ATCCTTCTTGCAGGGACGGAGCGCTTGCTGTCCTCTATTCTTTGGCCAGCACGCCAGAGT
TGGCCTGGGCTGCTGCCAAGCATGGCGGTGTAGTGTACATTCTCGAACTTATGTTACCCC
TTGAAGAGGAAATCCCTATGCAACAAAGAGCTGCAGCTGCATCCTTATTGGGCAAACTTG
CTGGGCAGCCGATGCATGGTCCCAGGGTGGCCATCACACTTGCTAGATTCTTGCCCGATG
GTTTGGTTTCTGCAATTAGAGATGGACCTGGTGAAGCTGTTGTTTCATCTCTTGAACAAA
CAACAGAAACTCCTGAACTTGTATGGACACCTGCAATGGCAGCTTCTCTTTCTGCTCAGC
TGTCTACCATGGCGGCAGACCTTTACCAAGAGCAGATGAAAGGACGTCTTGTTGATTGGG
ATGTGCCGGAACAAGCACCTGGCCAACATGTAATGAAGGATGAACCACAGGTTGGTGGAA
TATATGTGAGACTTTTCCTAAAGGATCCCAAGTTTCCACTGAGAAACCCTAAAAGATTCC
TTGAAGGGCTACTAGATCAATATGTTTCTTCAGTTGCTGCTACCCACTATGAAGCAAATG
CTGTTGATCCAGAACTCCCTTTGCTGCTTTCTGCCGCACTTGTTTCCTTGTTGCGTGTTC
ATCCGGCACTTGCAGACCATGTTGG

Homology of Contig U35_10982 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g42439.1	2633	6e-170	protein\|heat shock protein DnaJ, putative, expressed
Brachypodium v1_2	Bradi3g34450.2	2515	2e-171
Arabidopsis v10	AT2G26890.1	2554	1e-130	\| Symbols: GRV2, KAM2 \| DNAJ heat shock N-terminal domain-containing protein \| chr2:11462327-11473841 REVERSE LENGTH=2554