- Probe CUST_3352_PI390587928
- Source Contig U35_11884
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_3352_PI390587928 | Hv_44K_v2 | GATAACGCTTTTGACGAAAAACTTTTGACCGCATTCCGTGCAGCAATTGGGAAGTCCATG | 573 | GeneList: skyblue3 MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.492 | 1.069 | 1.469 | 0.958 | 0.677 | 0.634 |
| Raw | 72.184 | 72.536 | 96.896 | 89.508 | 24.024 | 25.251 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_11701.3 | 4462 | 2e-24 | 2448 - 2507 | 100 | 60 / 60 | minus | ABC17975 |
| MLOC | MLOC_11701.1 | 4726 | 2e-24 | 2583 - 2642 | 100 | 60 / 60 | minus | ABC17975 |
| MLOC | MLOC_11701.4 | 2805 | 2e-24 | 715 - 774 | 100 | 60 / 60 | minus | None |
| MLOC | MLOC_11701.2 | 4664 | 2e-24 | 2569 - 2628 | 100 | 60 / 60 | minus | ABC17975 |
| JLOC1 | JLOC1_7784.7 | 4634 | 8e-25 | 1979 - 2038 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_7784.6 | 4616 | 8e-25 | 1961 - 2020 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_7784.5 | 4630 | 8e-25 | 1975 - 2034 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_7784.4 | 4640 | 8e-25 | 1985 - 2044 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_7784.3 | 4636 | 8e-25 | 1981 - 2040 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_7784.2 | 4209 | 8e-25 | 1554 - 1613 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_7784.1 | 4212 | 8e-25 | 1557 - 1616 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC38424 | 649 | 3e-25 | 584 - 643 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_11884 | 639 | 3e-25 | 574 - 633 | 100 | 60 / 60 | plus |
Contig Sequence (639 bp)
>U35_11884 639 Hv_44K_v2 GGCACGAGGAGCAATGAAAAATCTCCTGTCATCAAATCTGCCCAACTTTCTTCAGCAGCT AGCATGTCTGCAATATCGTCTGGCATTGATATGATCAACACAGATGCAGTTCGTAAGAGG AAAGACGACAAGAACACGCAGTTACCACCCATGCAGGATCGACATAATATCAGTGATATG GAATTACAAAGTGAAATTAGCCATCCTGCGAAGAAAGCAAGACTGGAAGTGCAAGATCAG GAAATGCATCTCATTGCAAACTCGGGTGTTTCTTCATCAGACTGCCACGCTACTTCGATT GCAACCAATTTTATTGCCAGTGATACATCAAAAATCGTCACACAGAACAAATATGTCCCT GATATAATGAGCATAGTTGAAGGAGAGAGCTACATGAGGGATCCTGGCAGGGAGCTGGCG AAGCCTGTAGGGAGAAGAGCAGGAGATAAGCCTGGTCTTAGAATGAAGAAGATTTTACAC AAGGACGGAAAAGAATCAACTGCAGTAGTTCAGAAGCTACAACAAGAGATAAGGGAAGTA GTAAGAGATAATGGTATTAGTATACTTGAGAAGGATAACGCTTTTGACGAAAAACTTTTG ACCGCATTCCGTGCAGCAATTGGGAAGTCCATGGATGGA
Homology of Contig U35_11884 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | Bradi2g48387.1 | 1268 | 2e-90 | |
| Arabidopsis v10 | None |