barSeed - Barley Seed Development Database

Probe CUST_33519_PI390587928

Source Contig U35_10988

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33519_PI390587928	Hv_44K_v2	CATCCGAAGATTGTTGTGTGAGAAAAAATGTCATTTTGTTGTGTAAGCAAACGATCGATT	632	GeneList: darkslateblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.786	3.092	1.301	0.724	0.491	0.437
Raw	26.046	74.258	25.036	22.602	3.274	3.741

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_67934.1	1103	2e-24	61 - 120	100	60 / 60	minus	None
MLOC	MLOC_67934.2	1218	2e-24	57 - 116	100	60 / 60	minus	None
MLOC	MLOC_67933.1	4311	2e-24	3890 - 3949	100	60 / 60	minus	ABC18255
MLOC	AK360530	1363	7e-23	1255 - 1315	98	60 / 61	plus	None
JLOC1	JLOC1_44902.1	805	8e-25	659 - 718	100	60 / 60	plus
Harvest35	U35_10988	785	3e-25	633 - 692	100	60 / 60	plus

Contig Sequence (785 bp)

>U35_10988 785 Hv_44K_v2
TTTGAGCATACCGTGGATTTGCTATACCAGAAAGTCATTCAAAAGAAGAAACGGGATTGT
TCAACAGCGCAGCAGCTTGGTGCCACGTGCTTGGCTGGATATATTTCTGGTGCTGTTGGT
ACTGTTGTTTCAAATCCTGCAGATAACATCGTTTCTTCTCTGTACAACAAAAAGGCTAAA
AACGTTATACATGCTATAAAAAGCATTGGATTGCGTGGGCTGTTCACAAGAAGCCTGCCC
ATTCGAATTACCCTTGTAGGGCCTGTCGTGACCATGCAATGGTTCTTCTACGATACCATT
AAGATATTTACTGGATTGCCACCCAGTGGAGGGATTCCTCGTGATCTGGAAAATGTTGAC
ACATGATATGACCTGTTCTTCAAAAGTTTACCGATACATTCTTTATTTCCCAGAGGCACT
CAGAAGTATTTTACCCACAGTTCTGAGTTCTCTCTGATTATGGCGAGTGTGCGTGTGATT
TGTAGTTGTAGGGAACAACAACTAACTGGACCGTACGAAGGATTTGTATGTTCTAGATGC
ATCTTAGACAACCATAAGTCCATGAACTTCAGCACCCCTCTGGCACACATGATACAGCCT
GGTGGTGTATTCAGGATGCTTTGTAGTATCTCCATCCGAAGATTGTTGTGTGAGAAAAAA
TGTCATTTTGTTGTGTAAGCAAACGATCGATTATAGATCCATTGTAAATAATTTTGTGAA
GAATGAAAGACTGGAACCATAATATTATGTGTGATGTTACTGTTCCTTAAAAAAAAAAAA
AAAAA

Homology of Contig U35_10988 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g38100.1	324	3e-67	protein\|phosphate carrier protein, mitochondrial precursor, putative, expressed
Brachypodium v1_2	Bradi4g37420.1	324	1e-71
Arabidopsis v10	AT2G17270.1	309	2e-52	\| Symbols: PHT3;3 \| phosphate transporter 3;3 \| chr2:7510456-7512118 FORWARD LENGTH=309