barSeed - Barley Seed Development Database

Probe CUST_33518_PI390587928

Source Contig U35_46917

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33518_PI390587928	Hv_44K_v2	CCTTTGTAAACCAGTTTGCATCTTACACACCATAAATACTAGGCTGCAATGCTGATCAAA	14	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_55110.2	2184	2e-23	1841 - 1898	100	58 / 58	plus	ABC47592
MLOC	MLOC_55110.3	1763	2e-23	1420 - 1477	100	58 / 58	plus	ABC47592
JLOC1	JLOC1_35529.4	1386	1e-23	1207 - 1264	100	58 / 58	plus
JLOC1	JLOC1_35529.3	1398	1e-23	1219 - 1276	100	58 / 58	plus
JLOC1	JLOC1_35529.2	1488	1e-23	1309 - 1366	100	58 / 58	plus
JLOC1	JLOC1_35529.1	1739	1e-23	1560 - 1617	100	58 / 58	plus
Harvest21	ABC47592	540	3e-25	15 - 74	100	60 / 60	minus	ABC47592
Harvest35	U35_46917	540	3e-25	15 - 74	100	60 / 60	minus

Contig Sequence (540 bp)

>U35_46917 540 Hv_44K_v2
TTTTTTTTTTTTTTTTTGATCAGCATTGCAGCCTAGTATTTATGGTGTGTAAGATGCAAA
CTGGTTTACAAAGGGGTAGTTCAAGATGCTTATCAGGTTAAGATGGGGATTCGTGCTATA
ACAGCAAATTATGTTATCGCATCCTATCCAAAGGCTACCATGTGTAAAGAGGGGTGGATC
TATCCCCTGTGTGTCTTTTCAAACTTAACGATTATGCTTCTTTTGATCAAGACTTGCTTA
GGGGTACAACAAGGGCAGTTTTGAGGGATGATAAAGGAAACTTCATTGCTGGAGAGAATG
CGGATGTCCCGACGGCTTCGCTCTTGCCCTTGCACAAAGGATGAGATGCAATCGACTCGT
TGTTAATTCAGATAACCTGATGCTATATGCGGCTATGCTCAATAGAGCCCCAGTGTCCTC
AACTCCGTGACATGGCTAGGATCAAGGTCTGGCACTGGATCAGACCCTTCAAGATCCTCT
ACGATATACTCCTTGGTTAACTCTTGCTTTGCAAGAACATGGGAGTGCCGTTCGGTGATC

Homology of Contig U35_46917 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None