- Probe CUST_33516_PI390587928
- Source Contig U35_46918
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_33516_PI390587928 | Hv_44K_v2 | CCGGGTTTTACCTTGTAGTTGTACATTTGTCACACATATTACCTTATTTAGTGGAACTTT | 46 | GeneList: darkslateblue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.699 | 3.379 | 1.337 | 0.715 | 0.970 | 0.863 |
| Raw | 11.211 | 35.637 | 12.520 | 9.383 | 2.885 | 2.911 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| JLOC1 | JLOC1_8382.1 | 1162 | 8e-25 | 1089 - 1148 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC47593 | 312 | 3e-25 | 47 - 106 | 100 | 60 / 60 | minus | ABC47593 |
| Harvest35 | U35_46918 | 312 | 3e-25 | 47 - 106 | 100 | 60 / 60 | minus |
Contig Sequence (312 bp)
>U35_46918 312 Hv_44K_v2 TTTTTTTTTTTTTTTTTAAAAGTCAGTAAAATCTGATATTTTAATAAAAGTTCCACTAAA TAAGGTAATATGTGTGACAAATGTACAACTACAAGGTAAAACCCGGAATTCACTCTTCTA TATATATGCTTCTATTCCTCGGCTCCTTTCTAGTCGCAGATTCCGGCGCTGATTTTCAGT TATATCTCACCATCCCAGAGCTCGTCCATCGTTTTGTAAATGCTCCGAGGGTGCACCAAT GAATCGTTCCTGATTCGCTTAACCTGTTCAATTTCAGAAAACTTGGCACACAGTTCTTGA GGAATAGACCAG
Homology of Contig U35_46918 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |