barSeed - Barley Seed Development Database

Probe CUST_33515_PI390587928

Source Contig U35_46919

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33515_PI390587928	Hv_44K_v2	TTGTGATATGATGGCTTATGAGAAGGGCCCGTTCTTTTGGCGGCTTAAAATATAAGCAAA	14	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.168	1.869	1.116	0.747	0.342	0.531
Raw	740.247	995.448	520.729	561.080	89.070	149.526

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC01908	731	3e-25	658 - 717	100	60 / 60	plus	ABC01908
Harvest35	U35_46919	527	3e-25	15 - 74	100	60 / 60	minus

Contig Sequence (527 bp)

>U35_46919 527 Hv_44K_v2
TTTTTTTTTTTTTTTTTGCTTATATTTTAAGCCGCCAAAAGAACGGGCCCTTCTCATAAG
CCATCATATCACAACCTTTGGAGTTTGGAGGCATACGTCATGCAAAATAAAGTTATATCA
AAGAAGCTGATAAGTGATAAGGAGATCTTTTAACCCAGAGAATGGAAATGTTTAGGAGGT
TGAGCCTCATTCGGATAAATATCTGGCAATCAAATAATTCAGGTACAAAACTGAAACTAA
GGAAACATATCATTATCCCAAACAAGCTCCTCAGACAATGGCATTTGCGGCGCTAGCGAT
CCTAGGCCAGAGGTCAGCACACTCCTTACCAATGGGTCCTGTGATAGCAGATCCTTTCAT
CTCACCCTTAGGGTTCACAATCACCCCAGCATTATCTTCGAAGTACATGAAGACACCGTC
CTTTCGGCGCCATGGCTTGCGCTGGCGCACGATGACAGCCGGCATGACCTTCTTCCTGAG
GTCGGGCTTCCCCTTCTTGACGGTGGCCATGACCATGTCGCCGACGC

Homology of Contig U35_46919 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g32920.1	141	3e-54	protein\|ribosomal protein, putative, expressed
Brachypodium v1_2	Bradi3g55140.1	141	5e-55
Arabidopsis v10	AT3G04400.1	140	2e-54	\| Symbols: emb2171 \| Ribosomal protein L14p/L23e family protein \| chr3:1167339-1168308 FORWARD LENGTH=140