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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_33509_PI390587928Hv_44K_v2CATGGTAGTAAATATGAGATGTAATCGCACTCGTAGTGCAGTTAATCGTATTTTTGTAGC650GeneList: red
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 1.2801.6931.3230.8690.3630.420
Raw 257.267536.032362.708366.68855.17268.554



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCMLOC_61255.364387e-236288 - 63489860 / 61plus ABC17845
MLOCMLOC_61255.461697e-235939 - 59999860 / 61plus ABC17845
MLOCMLOC_61255.166977e-236521 - 65819860 / 61plus ABC17845
MLOCMLOC_61255.263917e-236215 - 62759860 / 61plus ABC17845
JLOC1JLOC1_40025.258094e-235524 - 55849860 / 61plus
JLOC1JLOC1_40025.162184e-235933 - 59939860 / 61plus
Harvest21ABC178457133e-254 - 6310060 / 60minusABC17845
Harvest35U35_229657133e-25651 - 71010060 / 60plus



Contig Sequence (713 bp)

>U35_22965 713 Hv_44K_v2
AAGCACATGAGGAGAATATCAAGCAAGCCGAGCTTGAGAAGAAAAAAGCTCAAAAAGAGG
CAGAAGCAGAGAAGTCTAAGAATGCTCAGTTGGCCAGTAAAAATGACTCAAAAGCATCGA
ATCCAAGCCGACAAGCAAAACAAACGTTAGAGAAAACAAGATCTACAAGTAGGCGAGGAA
AAGATGGTGGATGATCTGTGGGACCAACTCCAGTGTTGTGATTTTGATCTGCCTGCGGGG
CAAATGCATGCCCTGCCGGGTGCATGCGAAGGACCATGGATTCGCACCGCGTCTTTGAAG
GCAAAGAAAAGGAGAAGGCGTGTGAATGGATGCAGTGACCAGGGGAAGTAGAACACATTT
AAGCAATTGTACAGTACCAACTGTACTCCCACCACGGTCTCACTGGCAATGGTCGACTAT
TTTTTCCCCCCTTCGGCCAGTAGGTGTTCAGTGCCAACATCTGGCTGATGTAAAGAGCCA
ACTGTGAAGCTAACTTCATTCTTTTTTCTTACCTGTGCTATGTTACCTGTTCTTTCTAAC
ACCGGGGGCCAAGTACAGCCGTAGCTTTAGGAGAGTGCAACCAAGGCACGAAGGTGCGAA
TTGTACAAATAGGAGTAGGGAAAGGGTAGGAGCAAAGAATGTGTGTCTGGCATGGTAGTA
AATATGAGATGTAATCGCACTCGTAGTGCAGTTAATCGTATTTTTGTAGCTAG



Homology of Contig U35_22965 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2None
Arabidopsis v10None