barSeed - Barley Seed Development Database

Probe CUST_334_PI390587928

Source Contig U35_32013

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_334_PI390587928	Hv_44K_v2	CCTCCTGCTCGCGGCCCTCTTCTCCGCGCCCTCCCTCTGGTCCCGCTTCAACACGCCCTA	350	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_6836.4	2130	2e-24	338 - 397	100	60 / 60	plus	None
MLOC	MLOC_6836.3	2753	2e-24	2320 - 2379	100	60 / 60	minus	None
MLOC	MLOC_6836.8	592	2e-24	50 - 109	100	60 / 60	minus	None
MLOC	MLOC_6836.7	1540	2e-24	998 - 1057	100	60 / 60	minus	None
MLOC	MLOC_6836.2	2204	2e-24	1662 - 1721	100	60 / 60	minus	None
JLOC1	JLOC1_4472.3	2567	8e-25	484 - 543	100	60 / 60	plus
JLOC1	JLOC1_4472.2	2839	8e-25	484 - 543	100	60 / 60	plus
JLOC1	JLOC1_4472.1	2277	8e-25	484 - 543	100	60 / 60	plus
Harvest35	U35_32013	410	3e-25	351 - 410	100	60 / 60	plus

Contig Sequence (410 bp)

>U35_32013 410 Hv_44K_v2
AAAAAAAAAAAAAAAGGCACACTCCCACTCTCGTCTCGCACCGCGCCGCCGGCGGAAGCG
ATGGCGGAGCTTCGGCACTCGACGGCGGCGGCGGCCGCCCGCGCATCCAACTCTCCGGCA
AAGCGCGACTCCGACGCGTCCTCCGCTTCCTCCCCATTCGCTTCCACCTCCGCCGCCCGC
GGCCGCGACGACGACGGCAAGGACGCCCACCGCTCCTCACTTCTCCCCCCGCACCACCAT
CACCACAGGCAGCTCCTTCCGTCTCCCCTCCGCTCCCTCCTCGCCCTCGAGGACCCCAGG
ACCCCCACCGCCTCCCTCTCCTACCGGATCTTGCTCGCCGTCCTCGCGCTCCTCCTGCTC
GCGGCCCTCTTCTCCGCGCCCTCCCTCTGGTCCCGCTTCAACACGCCCTA

Homology of Contig U35_32013 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None