- Probe CUST_33492_PI390587928
- Source Contig U35_46922
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_33492_PI390587928 | Hv_44K_v2 | ATTCCAGGTTATGCTGTCGAAGGCTCGCTTGCAAAGACAATCATCAATGAGCCAAGAGAA | 472 | GeneList: darkorange2 MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.311 | 0.940 | 1.698 | 1.464 | 0.684 | 0.603 |
| Raw | 120.376 | 119.780 | 216.983 | 282.350 | 48.430 | 46.263 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_71779.1 | 2635 | 2e-24 | 1302 - 1361 | 100 | 60 / 60 | minus | ABC11280 |
| MLOC | MLOC_71779.2 | 2209 | 2e-24 | 1299 - 1358 | 100 | 60 / 60 | minus | ABC11280 |
| MLOC | MLOC_71779.4 | 1880 | 2e-24 | 1159 - 1218 | 100 | 60 / 60 | minus | ABC11280 |
| MLOC | MLOC_71779.3 | 2554 | 2e-24 | 1267 - 1326 | 100 | 60 / 60 | minus | ABC11280 |
| JLOC1 | JLOC1_47727.2 | 2553 | 8e-25 | 1190 - 1249 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_47727.1 | 2112 | 8e-25 | 749 - 808 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC47601 | 548 | 3e-25 | 473 - 532 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_46922 | 548 | 3e-25 | 473 - 532 | 100 | 60 / 60 | plus |
Contig Sequence (548 bp)
>U35_46922 548 Hv_44K_v2 CTCCCCTGAGGTTTGCATCATCGAATCAACTTATGGTGTGCAGCAACACCAACCCCGCCA TGTCAGAGAGAAGCGCTTCACTGATGCCATTCACAACACTGTTTCTCAAGGGGGTCGTGT TCTTATCCCAGCGTTTGCTCTTGGTAGAGCACAGGAGCTGTTGCTTATCCTGGATGAGTA TTGGTCTAACCACCCAGAGCTTCACAAGATTCCAATCTATTATGCCTCCCCTCTTGCCAA GAAGTGCATGGCTGTGTACCAGACATACATAAACTCCATGAATGAAAGAATCCGAAACCA GTTTGCGCAGTCCAATCCCTTCCATTTCAAGCATATTGACCCTTTGAATAGCATAGACAA CTTCCATGATGTGGGTCCGTCAGTGGTGATGGCAAGTCCAGGTAGCCTCCAAAGTGGCCT CTCCAGACAGCTCTTTGACAAGTGGTGCACAGATAAGAAGAACACATGTGTTATTCCAGG TTATGCTGTCGAAGGCTCGCTTGCAAAGACAATCATCAATGAGCCAAGAGAAGTGACACT AGCAAACG
Homology of Contig U35_46922 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os03g63590.1 | 701 | 3e-120 | protein|metallo-beta-lactamase, putative, expressed |
| Brachypodium v1_2 | Bradi1g01200.1 | 691 | 1e-123 | |
| Arabidopsis v10 | AT1G61010.1 | 693 | 4e-107 | | Symbols: CPSF73-I | cleavage and polyadenylation specificity factor 73-I | chr1:22474954-22477660 REVERSE LENGTH=693 |