barSeed - Barley Seed Development Database

Probe CUST_33479_PI390587928

Source Contig U35_22972

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33479_PI390587928	Hv_44K_v2	ATTGTCATTGGCAGTGCCTTTGTAAGATAGTTCTTTGACTGAGATCAACAAATTGTGTGG	1219	GeneList: darkgreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.546	2.409	3.758	2.000	0.597	0.728
Raw	199.454	1367.415	1783.083	1562.453	156.340	208.810

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_60199.1	2160	3e-21	43 - 102	97	58 / 60	minus	None
JLOC1	JLOC1_39233.1	1819	2e-21	1740 - 1799	97	58 / 60	plus
Harvest35	U35_22972	1335	3e-25	1220 - 1279	100	60 / 60	plus

Contig Sequence (1335 bp)

>U35_22972 1335 Hv_44K_v2
CGCCACCGTCGCCCGCGCGCCCGCCAAGGACTTCATGGCCGTCCGGCAGGAGTGGGCCGC
CATCCGCATCCAGACGGCCTTCCGCGGCTTCCTGGCGCGGCGGGCGCTGCGGGCGCTCAA
GGGGCTGGTGCGGCTGCAGGCCATCGTGCGCGGCCGGCAGGTGCGGAAGCAGGCGGCGGT
GACGCTCCGGTGCATGCAGGCGCTGGTCCGCGTGCAGGCGCGCATCCGGGCGCGCCGCGT
GCGCATGTCCACCGAGGGCCAGGCCGTGCAGAAGCTCATCCAGGCTCGCCGCACCAAGCT
CGACATCCTCCGGGAAGCCGAGGAGGGATGGTGTGACAGCCAGGGAACGCTGGAGGAAGT
GAGGGTGAAGCTGCAGAAGCGGCAGGAAGGAGCAATCAAGCGCGAGCGGGCCATCGCATA
CGTCTATCAAGGCGTAGCGAAATGCAATCAACCGAAGGGCAGCAATGGCCGGTCCAACCA
GTCGGGGCTCCTGCTCAAGCACCAGCACTGCGACAAGAACAACGGCAGCTGGAGCTGGCT
GGAGAGGTGGATGGCGGCGAGGCCATGGGAGAACCGGCTGATGGAGGAGCACAACCAGAC
CACCACCAGCTCGCCGGACCTGGTGCCCTCCTCCAAGGACTGCGAGGACGCCTTCGGCGT
GCTCGCAGACTTCTCCGAACCGAATTCAGTCAAGGTGAGAAAGAACAACGTGAGCAAGAG
GATCAGCGCCAAGCCGCCAGGCGCGACGCACCCGCATCGGTTCAAAGCGCAGTCCATCTC
GTCCCTGAGCACCGATCTGCACAACGACGAGAGCTCGGCGTCGTCGTCATCGTGCTTCGC
GTCGACGCCATTGTCGTTCTCCACCTTGCTCACGCCAGAGAAGACCGATGGCAGCGGCGG
CGTCAGGTCAAGGCCGAACTACATGAGCTTGACGGAGTCCATCAAGGCGAAGCGAAAGCC
CTGCGGCGCGCAGAGGACGGCGGCGTCGAAGCAGTTAGATGACAGGAAAGCCCCCGGCGC
CGATTTGAAGGCCGCCAAGGCGTAGATCGTGCGGCGTTCATGGGACTCCATGATGAGATG
AAGAGCCAATTTTCTAGCTCTCTCTAGGGTGTTTTCAGTGTCTTGGTGCTGCATTCTTGA
GTGTGTGCGTGTGTGTTGCTGGTGTCTCATGTTCAACATCTTGTTGTCGGATTGGTTGCC
CCGTCTCAGGGCAGTCCTCATTGTCATTGGCAGTGCCTTTGTAAGATAGTTCTTTGACTG
AGATCAACAAATTGTGTGGNTTTTGTTCTTTCAGGCTGTGAACAAGGTTACCAAACCCAA
AAAAAAAAAAAAAAA

Homology of Contig U35_22972 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g09790.1	443	5e-154	protein\|IQ calmodulin-binding motif domain containing protein, expressed
Brachypodium v1_2	Bradi2g05840.1	440	1e-171
Arabidopsis v10	AT2G26180.1	416	2e-70	\| Symbols: IQD6 \| IQ-domain 6 \| chr2:11143433-11144982 REVERSE LENGTH=416