barSeed - Barley Seed Development Database

Probe CUST_33475_PI390587928

Source Contig U35_22976

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33475_PI390587928	Hv_44K_v2	TTAGCAGGGTTAAAAGATGAACTCCAATGCGGGGTTGTTGCGGAGACACAATTAACCGAT	913	GeneList: sienna3 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	10.144	5.056	1.623	0.494	0.053	0.041
Raw	12152.530	9982.290	2608.377	1305.116	50.199	40.645

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_47456.1	2569	3e-22	2374 - 2432	98	59 / 60	plus	ABC05703 ABC13674
JLOC1	JLOC1_30598.1	2395	1e-22	2200 - 2258	98	59 / 60	plus
Harvest21	ABC32098	656	3e-25	594 - 653	100	60 / 60	plus
Harvest35	U35_22976	976	3e-25	914 - 973	100	60 / 60	plus
Harvest35	U35_35213	401	2e-21	213 - 271	97	58 / 60	plus

Contig Sequence (976 bp)

>U35_22976 976 Hv_44K_v2
CGCTCGCGGGCTCGTCCGACTACGTGCTCCTCTTCATGGGGCTCAGCCAGCAGCAGGAGA
GCGAAGGGCGCGACAGGACCAGCCTGCTGCTCCCCGGGCAGCAGCAGAGCCTCATCACCG
CCGTCGCCGACGCCGCCAAGAGGCCCGTCATCCTGGTGCTCCTCACGGGCGGGCCGGTGG
ACGTGACCTTCGCCAAGAACAACCCCAAGATCGGCGCCATCCTCTGGGCCGGATACCCCG
GCCAGGCCGGCGGGCTCGCCATCGCCAGGGTGCTCTTCGGCGACCACAACCCAGGCGGGA
GGCTGCCCGTGACCTGGTACCCGGAAGAGTTCACCAAGGTGCCCATGACCGACATGCGGA
TGCGCGCCGACCCGGCCACCGGTTACCCCGGCCGGAGCTACCGCTTCTACCGGGGAGCGA
CCGTCTACAAGTTCGGCTACGGCCTCAGCTACTCCCGGTTCTCCCGCCGGCTAGCATCCT
CCGGAATGACCGGTGACCAAAAGAATCTGCTTGCCGGACTGACATCGACGACAGCGGCGG
ACGATGGCGTGAGCCACTACGACGTGGAGGAGATCGGGGCCGAGCGGTGCGAACAGCTCA
AGTTCCCGGCGGTGGTCGAGGTGGAGAACCACGGTCCCATGGACGGAAAGCACTCGGTGT
TATTGTTCCTCCGATGGCCCAACGCGACGGGTGGGCGCCCGGCGAGCCAGCTCGTCGGGT
TCCAAAGCCAGCATCTCGAGTCCGGCGAGAAGGCTAGCCTGACGTTCGATGTCAGCCCAT
GCGAGCACTTGAGCAGGGCGAGGGAGGACGGCAAGATGGTGATCGACAGAGCCTCACATT
TCCTCTTTGTTGACGAGGATGAGGCCGAGATCAGCTTCGACTCCTGAATTAAGTCTCCTT
AGTTAGCCTATTTTTAGCAGGGTTAAAAGATGAACTCCAATGCGGGGTTGTTGCGGAGAC
ACAATTAACCGATGCC

Homology of Contig U35_22976 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g19210.1	783	3e-164	protein\|beta-D-xylosidase, putative, expressed
Brachypodium v1_2	Bradi4g20197.1	762	2e-165
Arabidopsis v10	AT1G78060.1	767	5e-98	Glycosyl hydrolase family protein \| chr1:29349796-29352868 REVERSE LENGTH=767