barSeed - Barley Seed Development Database

Probe CUST_33473_PI390587928

Source Contig U35_22978

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33473_PI390587928	Hv_44K_v2	GCAGCCATACTGAAAATGTGAATGTGGACCCTCAAAAGAAAATCAAAATGTGAATAAACA	546	GeneList: salmon MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	5.518	4.759	1.139	0.827	0.581	0.718
Raw	72.966	104.436	21.121	24.695	5.076	7.139

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK358660	2931	2e-24	2716 - 2775	100	60 / 60	plus	ABC20215
MLOC	MLOC_12526.1	2903	2e-24	2762 - 2821	100	60 / 60	plus	ABC20215
JLOC1	JLOC1_8406.2	2889	8e-25	2655 - 2714	100	60 / 60	plus
JLOC1	JLOC1_8406.1	3089	8e-25	2855 - 2914	100	60 / 60	plus
Harvest21	ABC20215	639	3e-25	34 - 93	100	60 / 60	minus	ABC20215
Harvest35	U35_22978	639	3e-25	547 - 606	100	60 / 60	plus

Contig Sequence (639 bp)

>U35_22978 639 Hv_44K_v2
CGCCCATGCCATGGAGACCGCGCTGGAGGAAGACGGCGATGATTCCTCCTTCGCAGAGAT
GCTGGACGCGACCGCCGGGGAGTGGCCGCCGGAGGAGGCACGGGAGCTGGCCTTGCTGGC
GCTGCAGTGTGCGGAGATGCGGCGCAAGGACCGGCCCGGGCTACACGAGCACGTCCTCCC
GGCGCTGGAGCGGATCAAGGGCGTCGCAGCCAGGGCAGCCAGGGAGACGAAGGCCCTTCT
TCTCCGGTCGGTGTCAGCTGCGGCCGCGGGGGCGCCCGGGCATTTCCTCTGCCCCATTCT
TCAGGAAATCATGGAGGACCCATGCGTCGCCGCCGACGGGTACACGTACGACCGGAAGGC
GATCGAGACGTGGGTGAGCATGAAGGACAAGTCGCCGATGACCAACCTGCGGCTGCCGAG
CAGGAGCCTCATCCCCAACCACTCGCTCCGGTCAGCGATCATGGACTGGAGATCCAAAAA
CACATGATGATCAGATGATATGAAGTAGTCTTCGCAAATACTACTATAGATTTAGTGTTG
TGTTGTGCAGCCATACTGAAAATGTGAATGTGGACCCTCAAAAGAAAATCAAAATGTGAA
TAAACAAAAAAAAATTGCTTTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_22978 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi1g51250.1	837	2e-55
Arabidopsis v10	None