barSeed - Barley Seed Development Database

Probe CUST_33471_PI390587928

Source Contig U35_34950

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33471_PI390587928	Hv_44K_v2	AGATTCAGAAATCCTTGGAACGTATTTTATATACCTGGGCCATCAGGCACCCTGCAAGTG	488	GeneList: darkturquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.347	0.482	1.286	2.173	0.906	1.005
Raw	5.816	13.472	33.176	86.143	13.070	16.051

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_6927.5	1455	2e-24	594 - 653	100	60 / 60	plus	ABC26532
MLOC	MLOC_6927.2	1829	2e-24	922 - 981	100	60 / 60	plus	ABC26532
MLOC	MLOC_6927.3	1757	2e-24	922 - 981	100	60 / 60	plus	ABC26532
MLOC	MLOC_6927.4	1535	2e-24	917 - 976	100	60 / 60	plus	ABC26532
JLOC1	JLOC1_4557.2	1517	8e-25	621 - 680	100	60 / 60	plus
JLOC1	JLOC1_4557.1	1796	8e-25	900 - 959	100	60 / 60	plus
Harvest35	U35_34950	845	3e-25	489 - 548	100	60 / 60	minus

Contig Sequence (845 bp)

>U35_34950 845 Hv_44K_v2
CTACTATAGGGCGAATTGGGCCCTCTTCATAATGCTCGAGCGGCCGCTGGGGCTCACACG
ATCATTAACGTCTGGAATAAAGGTCTAGTTACGTCCAGACTGACATCCTCATCTCTCGTT
TGAGCCAGCCGTTGTAGTCCCAAAAGGTTACTTCTTGACAAGTGGTTCAACGATAACGCC
TCGTCTCCGCGTCCTGGCGGAAATAACCCTTTGGTATTACAAGAGCGTGCAATCAGTTCA
TAGCCCCCTGGACAGTGTAATAGGTTCAGCCAATGTCATGATCAATTCCATATACCTACT
GAGAAGGCTCGGGCTTCGGCACTTACCGAGCTATAAGGGACAAAATTAGTAGGTCAGCTT
ATGCTACTTCGACCATGTTTGTTAGACTACTTATTTTTGTACCCCAAGACTGGACAGAGT
ACAGAGAATAAGCAAGTGTTTCTAGCGGCCGCTCGGTGTAACAAGGTCGTTTATTCCTTG
GACGTAGCCACTTGCAGGGTGCCTGATGGCCCAGGTATATAAAATACGTTCCAAGGATTT
CTGAATCTGAGGATCCTGGAAAAATGTAACATCTGGCACAGTTCTTGGGCAATCAACAGC
AATCTGGCGAAACATAGTAATCTCTTCATCTGAGCGTTCAGTATCCGAAATATCATAATA
TTGAGAAACACATTCTACATACTCAAGTCTTTTCCTCGTTAAAACACCTTCTCTTCTATC
CGCATTGGGTGGTGCATATCCCAAAAGAAGCCTCCATATGTTAGGTCGCATATAAGGTGG
CACGCCACCCCAAGATAATTCACGCAATTTATCTAATATAACAGCTGGCCTAGAGAGTTC
ATTTG

Homology of Contig U35_34950 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g34040.1	445	3e-82	protein\|TBC domain containing protein, expressed
Brachypodium v1_2	Bradi3g38690.1	437	5e-82
Arabidopsis v10	AT2G30710.1	440	2e-67	Ypt/Rab-GAP domain of gyp1p superfamily protein \| chr2:13086147-13088991 REVERSE LENGTH=440