- Probe CUST_3346_PI390587928
- Source Contig U35_11889
Probe Details
Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
---|---|---|---|---|
CUST_3346_PI390587928 | Hv_44K_v2 | AAGAAGACTACAGAGGCCCGAGCTCCATCTTTTGATGAAAAAGAAAGAGAAAGATGCATA | 404 | GeneList: green MasterList: None |
Probe Values
3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
---|---|---|---|---|---|---|
Normalized | 0.994 | 1.463 | 1.533 | 1.174 | 0.646 | 0.643 |
Raw | 453.298 | 985.616 | 939.377 | 1076.270 | 217.873 | 238.029 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
---|---|---|---|---|---|---|---|---|
MLOC | AK357735 | 2017 | 2e-24 | 1545 - 1604 | 100 | 60 / 60 | plus | None |
MLOC | MLOC_71631.6 | 2414 | 2e-24 | 635 - 694 | 100 | 60 / 60 | minus | ABC23067 |
MLOC | MLOC_71631.2 | 2408 | 2e-24 | 784 - 843 | 100 | 60 / 60 | minus | ABC23067 |
MLOC | MLOC_71631.1 | 2429 | 2e-24 | 784 - 843 | 100 | 60 / 60 | minus | ABC23067 |
MLOC | MLOC_71631.3 | 2739 | 2e-24 | 764 - 823 | 100 | 60 / 60 | minus | ABC23067 |
MLOC | MLOC_71631.4 | 2601 | 2e-24 | 764 - 823 | 100 | 60 / 60 | minus | ABC23067 |
MLOC | MLOC_71631.5 | 2867 | 2e-24 | 746 - 805 | 100 | 60 / 60 | minus | ABC23067 |
JLOC1 | JLOC1_47622.3 | 2677 | 8e-25 | 1707 - 1766 | 100 | 60 / 60 | plus | |
JLOC1 | JLOC1_47622.2 | 2897 | 8e-25 | 1927 - 1986 | 100 | 60 / 60 | plus | |
Harvest21 | ABC24319 | 542 | 3e-25 | 405 - 464 | 100 | 60 / 60 | plus | |
Harvest35 | U35_11889 | 542 | 3e-25 | 405 - 464 | 100 | 60 / 60 | plus |
Contig Sequence (542 bp)
>U35_11889 542 Hv_44K_v2 CGGCTGAGAAGGAGCCGTATATTTGGAGATCATCAAGTACGCATGCGTGGACAGAAACAC TTATGGAGGCATCTGCCTTTGCTCATATCTCAGAGGAAGCTGCACAAGATGATGTCTTAC AAGGCCAACAAGGAGCGACTCCTGCGATTTCCAGTCCAATTATAAAGAAAGATGTTGCCA CACAAATGAGTCCTGATGACAGTATAATATCCTCCTCCCCAAAAGCGAGGCATTCCTGCT CCAGCTTGCCGTCAGGACATGCTATTAGAGAATCCAATAGGCATACACCTAAGGTTGAAG TTAGGGATGTGCAGGTAGATGATCAAGTAACTGTTACCCGGTGGTCCAAGCGACATGTAA CACGAGGCTCTGATAAGCGATCAACAAATATTGTGGAATGGAGGAAGAAGACTACAGAGG CCCGAGCTCCATCTTTTGATGAAAAAGAAAGAGAAAGATGCATATCANAGTGCAAGAGAG AGGAAGCAAAGATCACTGCTTGNGAAAATCTGCAGAAAGCAAAAGCAGAGGCAGCAATTC GG
Homology of Contig U35_11889 to Model Species (E-value threshold 1e-50)
Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
---|---|---|---|---|
Rice v7 | LOC_Os02g52810.2 | 424 | 3e-79 | protein|remorin C-terminal domain containing protein, putative, expressed |
Brachypodium v1_2 | Bradi3g57930.2 | 586 | 1e-84 | |
Arabidopsis v10 | None |