barSeed - Barley Seed Development Database

Probe CUST_33469_PI390587928

Source Contig U35_34952

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33469_PI390587928	Hv_44K_v2	GTGTCGATGTACATTTTACATACATACATATATATGCGTCAAAAGGCAAGCGCTTATCTA	294	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_64388.11	2402	2e-24	2317 - 2376	100	60 / 60	plus	ABC24807
MLOC	MLOC_64388.7	2478	2e-24	2417 - 2476	100	60 / 60	plus	ABC24807
MLOC	MLOC_64388.14	4073	2e-24	2459 - 2518	100	60 / 60	plus	ABC19630 ABC24807
MLOC	MLOC_64388.13	4065	2e-24	2451 - 2510	100	60 / 60	plus	ABC19630 ABC24807
JLOC1	JLOC1_42278.4	4071	8e-25	2331 - 2390	100	60 / 60	plus
JLOC1	JLOC1_42278.2	4087	8e-25	2347 - 2406	100	60 / 60	plus
Harvest35	U35_34952	355	3e-25	295 - 354	100	60 / 60	plus
Harvest35	U35_7584	709	3e-25	625 - 684	100	60 / 60	plus

Contig Sequence (355 bp)

>U35_34952 355 Hv_44K_v2
CTCCTATAGGGCGAATTGGGCCCTCTCGATAATGCTCGAGCGGCCGCTGACTAGTGGTGC
CGGTGGAAAGCCCGATAACCAATGCGAGGGAGGAGATGAGTCTTGTACTGGATCCGTACG
CCCTCACCTCGTTTGATCTCCTCTTGGACCAGAGCAGTAGCACGATGATGCATCCAGTCC
CAGAGTCAAGCTTGCATTCAAGTGTGTGAATACAGAAAGGAATGCGATAGACGAGAGAAC
CGCCTCTCAGTGCAAATCATGAACTTGGAATAAACATAAACTTAATGTGGGCGTGTGTCG
ATGTACATTTTACATACATACATATATATGCGTCAAAAGGCAAGCGCTTATCTAT

Homology of Contig U35_34952 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None