barSeed - Barley Seed Development Database

Probe CUST_33465_PI390587928

Source Contig U35_46930

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33465_PI390587928	Hv_44K_v2	CAGCAATATCTTGGTAAATTGAAGCTTTCTCATCTCATTTCCTGTGAAAGAGAAAATAGG	85	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_2725.2	4170	2e-24	2487 - 2546	100	60 / 60	minus	ABC41004 ABC47613 ABC48534
MLOC	MLOC_2725.1	4252	2e-24	2497 - 2556	100	60 / 60	minus	ABC41004 ABC47613 ABC48534
MLOC	MLOC_2724.5	2167	2e-24	1561 - 1620	100	60 / 60	minus	ABC47613 ABC48534
MLOC	MLOC_2724.3	3893	2e-24	1451 - 1510	100	60 / 60	minus	ABC41004 ABC47613 ABC48534
MLOC	MLOC_2724.4	3861	2e-24	1419 - 1478	100	60 / 60	minus	ABC41004 ABC47613 ABC48534
JLOC1	JLOC1_1630.1	3354	8e-25	1604 - 1663	100	60 / 60	plus
JLOC1	JLOC1_1629.2	2070	8e-25	1433 - 1492	100	60 / 60	minus
JLOC1	JLOC1_1629.1	2102	8e-25	1465 - 1524	100	60 / 60	minus
Harvest21	ABC47613	514	3e-25	86 - 145	100	60 / 60	minus	ABC47613
Harvest35	U35_46930	514	3e-25	86 - 145	100	60 / 60	minus

Contig Sequence (514 bp)

>U35_46930 514 Hv_44K_v2
TTTTTTTTTTTTTTTTTGAATACAGATTGAATTATATTGGTAGTATAAATGGTTAAAACA
AATGTTTATCTAGATATTGGTACTACCTATTTTCTCTTTCACAGGAAATGAGATGAGAAA
GCTTCAATTTACCAAGATATTGCTGTGCTACCAAACAACAGAAATGCTACCAACAGACGG
CCAAGGGAACAGAGATATTGTCATCTACCACAACAATTACGGGAATATACTCCACCACAG
TTGATGATATTGAAGCAGGAACCCAGAAAACGAACATCGCGGCGCTCCTGACCCAGCTCT
TCTTGTCGTTGAATGGCAGCTTCAATGAGCCGAACCTTCTCCCAACAGTGTCAGCAAACC
CTGCAAAGCCAACATCCAAGCAGGCGCAAAGCTCAGCGAAAATGAAACAGATCATCAAGT
ACAATTGCTTTCGAAGGGATGATTGACTTTACAGAGTTCTCCATTTTTGTGTCGGTCAGT
AACACGATGAGACCAAAATGGCTGACAAACTACT

Homology of Contig U35_46930 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None