- Probe CUST_33456_PI390587928
- Source Contig U35_46939
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_33456_PI390587928 | Hv_44K_v2 | GCCTTTCTACCTGCTATGTTTTAATATATGCCAGCATTCGAAGCTGGATCTTTCAAAAAA | 11 | GeneList: None MasterList: None |
Probe Values
This probe has no recorded values for this experimentProbe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_69919.1 | 863 | 2e-24 | 773 - 832 | 100 | 60 / 60 | minus | ABC04701 ABC35828 ABC49736 |
| JLOC1 | JLOC1_46360.1 | 939 | 8e-25 | 31 - 90 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_18406.1 | 129 | 8e-25 | 4 - 63 | 100 | 60 / 60 | minus | |
| Harvest21 | ABC47628 | 565 | 3e-25 | 12 - 71 | 100 | 60 / 60 | minus | ABC47628 |
| Harvest35 | U35_46939 | 565 | 3e-25 | 12 - 71 | 100 | 60 / 60 | minus |
Contig Sequence (565 bp)
>U35_46939 565 Hv_44K_v2 TTTTTTTTTTTTTTTTTGAAAGATCCAGCTTCGAATGCTGGCATATATTAAAACATAGCA GGTAGAAAGGCGGTTACAAAAGGGTCGGGGGATACGATCGAAAGATCAAGGAGAAAATGG CAGAGAAAGGAGAAAAAAACCCACGAACTATGAGAAATGTTCTCTGAAAGCAATATCTTC AGGAAGAAAACGACGTGCACACACCACCATTGCCGGATCCAATTGCTGAAGGTTAGTTCT CTGGTTTTCACCCTAGAGAGCACGGATGAGGATTCTCCAAAGCAATGCCCTGAACAAGGA AACACCGTGTACACGCCAGCATTGCCAGGTGCAAGCATCAAAGGCCAAACCTAGGGTTTT CACCCCACAGCTCGAGCCCGGTACTCGGGAAAGGTTGCTGTTGGATGCGGGTCATGATCG CCATCCTTGCCACCAACAAACACACTTCACGAATTTATCTGCTTATTTTTTTCCCTCAAA GCAACTTTAAACTTTAAAAGGAGAATGACTTTCTCTACTCACGGATCATAATAATTCATA TGATCTACGGTGCACATCCGGCAAG
Homology of Contig U35_46939 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |