barSeed - Barley Seed Development Database

Probe CUST_33450_PI390587928

Source Contig U35_22986

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33450_PI390587928	Hv_44K_v2	TATATAAGTCGCGTGGGATTGATCACCTTGTTATTCCTACTTCCTTCCCCGATGCGATCT	379	GeneList: lightcyan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.065	1.097	2.106	1.747	0.638	0.540
Raw	14.859	24.297	40.500	56.176	5.665	5.472

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC17067	537	3e-25	380 - 439	100	60 / 60	plus
Harvest35	U35_22986	537	3e-25	380 - 439	100	60 / 60	plus

Contig Sequence (537 bp)

>U35_22986 537 Hv_44K_v2
AGTCGCCGAGACAGAGACCTCCCCTGCGAATCTCGAGTGGCAACTAATCCGGCCGTCGTT
CGCACGGCCGAGGAACGCCGATTCTCCATGGCCGCGGCGGAGTCAGCCGGCCTGCACCGC
GGGGCGGGGGCGGGGGCTCGGAGGAAGGCGAAGGAGGCGGCGGTGGGCGCTGCCGCGAGG
GCGCTCTTCTACCCGACGCTGCTCTACAACGTGGTGAGGAGCAAGGTCCAGGCCGAGTTC
CGGTGGTGGGACGAGGTCGATCAGTTCGTTTTGCTTGGAGCTGTTCCATTCCGTAGGGAT
GTTCCACGCTTGCAGAAGCTTGGAGTACATGGTGTTGTAACCCTGAATGAACCATTTGAG
ACGTTAGTACCATCATCAGTATATAAGTCGCGTGGGATTGATCACCTTGTTATTCCTACT
TCCTTCCCCGATGCGATCTGGCGGCGACTCGCCCTCGCATGCCGACCAGCGTGCATCCTA
GCGCCGTACCGGTCCCGATCTCAAGTGGTTCGTCGACGTGGAGCCGAGGCGATCGAT

Homology of Contig U35_22986 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None