barSeed - Barley Seed Development Database

Probe CUST_33438_PI390587928

Source Contig U35_46944

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33438_PI390587928	Hv_44K_v2	GGCTCTGATGGTGCAAAGCTTGTGGCTACAAAGGCAAAGGGCCTGCCTCGCATCACCATT	314	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_68036.1	4051	2e-24	221 - 280	100	60 / 60	plus	ABC18979 ABC42436
MLOC	MLOC_68035.3	761	2e-24	119 - 178	100	60 / 60	plus	ABC18979
MLOC	MLOC_68035.4	777	2e-24	119 - 178	100	60 / 60	plus	ABC18979
MLOC	MLOC_68035.2	2142	2e-24	120 - 179	100	60 / 60	plus	ABC18979 ABC42436
MLOC	MLOC_68035.1	1125	2e-24	120 - 179	100	60 / 60	plus	ABC18979
MLOC	AK357150	1005	7e-23	379 - 438	98	59 / 60	plus	ABC18979
JLOC1	JLOC1_44975.3	1328	8e-25	123 - 182	100	60 / 60	plus
JLOC1	JLOC1_44975.2	1018	8e-25	123 - 182	100	60 / 60	plus
JLOC1	JLOC1_44975.1	1162	8e-25	123 - 182	100	60 / 60	plus
Harvest21	ABC47638	374	3e-25	315 - 374	100	60 / 60	plus
Harvest21	ABC34772	510	3e-25	423 - 482	100	60 / 60	plus
Harvest35	U35_46944	374	3e-25	315 - 374	100	60 / 60	plus
Harvest35	U35_38832	510	3e-25	423 - 482	100	60 / 60	plus

Contig Sequence (374 bp)

>U35_46944 374 Hv_44K_v2
GATGGCGGTAGGCGGAGGACCTGGAGGACGCGTTCGGCGCGGTCTTCGGCGAAGCCGAGG
CGGAGGGCCACCCCACCGCGCGCCCCATCCTCTTCCGCGCCCACGCCCGCTCCGCCGCCG
CCATCCGCGTCGTCGCCACCGACTGCCACTCCCTCGCCTGGGACTGCTCCCTCTCTGTCT
CCGACCTCGACGACCTCAGAGACGATGTTGGAATCGGGGGCTCCTGGGCCGACTTCCTGG
ATTACCTCAAGTCCTCCTTGTCCTCCGGCGAGGTGAAGCTGCTCTTCGCCGCCGACCAAC
TCCGCAAGTCAACCGGCTCTGATGGTGCAAAGCTTGTGGCTACAAAGGCAAAGGGCCTGC
CTCGCATCACCATT

Homology of Contig U35_46944 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None