- Probe CUST_33434_PI390587928
- Source Contig U35_22990
Probe Details
Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
---|---|---|---|---|
CUST_33434_PI390587928 | Hv_44K_v2 | CGATAAATAACCTCATGGGTGATGGAATGTTTGTCTGCAACTGCAAGCCCAGTTTTTCCT | 423 | GeneList: black MasterList: None |
Probe Values
3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
---|---|---|---|---|---|---|
Normalized | 0.112 | 0.040 | 0.387 | 2.670 | 2.490 | 3.679 |
Raw | 222.320 | 131.015 | 1106.000 | 10163.233 | 4135.890 | 6384.510 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
---|---|---|---|---|---|---|---|---|
MLOC | MLOC_22907.1 | 577 | 7e-23 | 500 - 559 | 98 | 59 / 60 | plus | None |
JLOC1 | JLOC1_15853.1 | 601 | 4e-23 | 496 - 555 | 98 | 59 / 60 | plus | |
Harvest21 | ABC17272 | 476 | 3e-25 | 417 - 476 | 100 | 60 / 60 | plus | |
Harvest35 | U35_22990 | 483 | 3e-25 | 424 - 483 | 100 | 60 / 60 | plus |
Contig Sequence (483 bp)
>U35_22990 483 Hv_44K_v2 GTCAATGGCACGACCAAGCATTGGCTCCGCCGCCCCGGTGCTGGTTCTGGCCTGGTGCTG CGCGACAGCCACCGCGCGAGGGACGGAGTGGGTCGTCGGCGGCGACAAGGGGTGGACCTT CGGCGTCGCCGGCTGGGAGAACCACAAGCCGATCCAGCCCGGCGACAAGCTCGTGTTCAA GTACCAACCTGGGGCGCACAACGTGGTGGAGGTGGACGTGGCCGGGTACATGGAGTGCAA GGCCCCCGACGGCGCCAGGACTCACACCACCGGCAACGACACCTTGGAGATGCCCGGCGG CAAGGCCTACTTCATCTGCACCTTCCCCGGCCACTGCGAGAAGGGCATGAGGATCGGCAT CCCGCCTAGATAAATAGGTCCGTTGATAAATAGCCCGACGTACTCTCTCGCGGGCTAGTT GAACGATAAATAACCTCATGGGTGATGGAATGTTTGTCTGCAACTGCAAGCCCAGTTTTT CCT
Homology of Contig U35_22990 to Model Species (E-value threshold 1e-50)
Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
---|---|---|---|---|
Rice v7 | None | |||
Brachypodium v1_2 | Bradi3g09640.1 | 127 | 8e-58 | |
Arabidopsis v10 | None |