barSeed - Barley Seed Development Database

Probe CUST_33430_PI390587928

Source Contig U35_22993

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33430_PI390587928	Hv_44K_v2	GTTTGTGGCGAGGACAGCTGTACAAAATTCCGGAAATAAAAAGGATTAAATGAGTAATAT	705	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK369948	2664	7e-23	2592 - 2651	98	59 / 60	plus	ABC17498
MLOC	MLOC_52291.1	1496	7e-23	1321 - 1380	98	59 / 60	plus	ABC17498
JLOC1	JLOC1_33495.1	1503	4e-23	1340 - 1399	98	59 / 60	plus
Harvest21	ABC17498	764	3e-25	705 - 764	100	60 / 60	plus	ABC17498
Harvest35	U35_22993	765	3e-25	706 - 765	100	60 / 60	plus

Contig Sequence (765 bp)

>U35_22993 765 Hv_44K_v2
GTACGCAGAAGATATTGAAAGTGGTTCTTCAGATGTTGAAACAAAGTACAAGAAAATGTA
CGAGGATGACATAAATCCTTTTGCTGCTTTCTCGAGGAAGGAAAAGGATCAAAGATACAA
GGAACTTGGTATAAGAGATAAGATCACCCTCAGTAGTGGCCGTTTTCTCCTTGGTAACAA
ATTTGCCCGGACATTTATATTCTTCTACACTATCGGGCTGCATCTCCTAGTGTTCACGCT
GCTGTACAGAATGTCAGCTTTGAGCTATCTGAGCATAACACCTGCACATGATGAGATCAT
TGTGGACGCTGGCAATCAGACACTATCACATACACTCTGAGCCAAGTTTGATGTAACAGT
ATTATCACTTGATCAGTACTGAAAACGAAGCGTTCCTGGGATTTGGTCGCGAGAATCTCT
GCATAGGATCATGACTGAAGTTTTAGTTTTACTATGCCCTTTAGGTGCCTTGATATGTTC
TCTTCTGTAGATAAATTTCCAGTAAAGCGGGTTACCAAGGGACGAGGTGGCGGATGAGGT
GTGTGGTGCTCGAGTCATTCTGTAAACTGTTGTATTACCAAATTGCCCATTTGATGACAA
ATGAAAGCACATATGTACAAACACAATGCCATCCAATGTACTCCCTCTGTAAAGAAATAT
AAGAGCGTTGCAGAGGGAGTATGTTTCANCATATATGGGTGGGGAGTTTGTGGCGAGGAC
AGCTGTACAAAATTCCGGAAATAAAAAGGATTAAATGAGTAATAT

Homology of Contig U35_22993 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g50300.1	669	1e-62	protein\|CASP, putative, expressed
Brachypodium v1_2	Bradi1g11300.1	698	8e-66
Arabidopsis v10	None