- Probe CUST_3342_PI390587928
- Source Contig U35_23861
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_3342_PI390587928 | Hv_44K_v2 | GGAACCTGTAAACAGAATAGTTGCTTTGATACTATGGCTTGCAGTATATATGCATACTGT | 26 | GeneList: brown MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 2.608 | 3.577 | 1.265 | 0.717 | 0.386 | 0.510 |
| Raw | 73.882 | 149.462 | 47.930 | 47.090 | 7.191 | 11.705 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK373023 | 1191 | 2e-24 | 1067 - 1126 | 100 | 60 / 60 | plus | ABC19191 |
| MLOC | MLOC_45263.1 | 835 | 2e-24 | 165 - 224 | 100 | 60 / 60 | minus | ABC19191 |
| JLOC1 | JLOC1_29386.1 | 769 | 8e-25 | 116 - 175 | 100 | 60 / 60 | minus | |
| Harvest21 | ABC19191 | 476 | 3e-25 | 27 - 86 | 100 | 60 / 60 | minus | ABC19191 |
| Harvest35 | U35_23861 | 476 | 3e-25 | 27 - 86 | 100 | 60 / 60 | minus |
Contig Sequence (476 bp)
>U35_23861 476 Hv_44K_v2 GTAACAAGTGAACTTCTCCATATAATACAGTATGCATATATACTGCAAGCCATAGTATCA AAGCAACTATTCTGTTTACAGGTTCCAAAAAGATGCAAATAATCAGCCATACAGTAATAT TTTCTAAAGACCGACTTATTGACTCGCTACAGCAGCTAATATGAATTAAAAAATTATAAG AGGCATCAGATCCTAAGATAAGAGACCATGAGTTGTACATATGTCTAACGAGACCGAGAG CACGTATGATATCCAGGTCTTGACAGAGAACTGAAAAAACCTGCATTCTTACACAAGCTC ATCTCTTCATGAAAAAGCCTAGTAGGATGCCCAGAATAGCGGCCACGAGCACAAAAAGTA GCGAGAAACCGACATTCTGCCTGCTGATTTCCCGTCTTAGGAGACGCAGTTCCTCTCGAA GCTTATTGTTCTCTTGAATAGCAAAATTCTTCTCCTCCTTCATCAACTTCGAAATT
Homology of Contig U35_23861 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |