barSeed - Barley Seed Development Database

Probe CUST_33419_PI390587928

Source Contig U35_34977

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33419_PI390587928	Hv_44K_v2	TGATGAACTCATATCTCTTCTTTTGCATTAGCAAGGGCATCCTTGAATCGTTGCCATCTG	556	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.792	1.661	1.031	0.930	0.456	0.526
Raw	357.279	542.062	283.989	413.301	68.602	87.474

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_7321.1	2262	2e-24	2077 - 2136	100	60 / 60	plus	None
MLOC	MLOC_7321.2	2106	2e-24	2000 - 2059	100	60 / 60	plus	None
JLOC1	JLOC1_4828.1	1757	8e-25	1651 - 1710	100	60 / 60	plus
Harvest35	U35_34977	619	3e-25	557 - 616	100	60 / 60	plus

Contig Sequence (619 bp)

>U35_34977 619 Hv_44K_v2
GGCGAATTGGGCCCTCTTCCAAAAGCTCGAGCGGCCGCTCAGATTTCCTGGTGTTCACGT
ATCACTTTCTGGGATCTATGCATCATTAGGCCAATGGGAGGATGTGAAGGCAATCAGGAA
GCTGATGAGGGATAGCAGGATTAAGAAGCTTCCCGGTTTTAGCTGGGTTGATGCTAATAA
CAAAACTCATGTTTTTTCCTCCGAAGATTGGTCACATCCACAGCAGGAGAAGATATATAA
AAAACTTGAGGAAGTCTATGAGAGGATAAAGGAGGAAGGTTACGTCCCAGACACACGGTC
CTTACCATGTAATTTAGAAGATACTGCAAAGGAGAGGATTCTGCGTTATCACAGTGAGCG
GATTGCCGTAGCTTTTGCTCTGATAAGCATGCCTGCTACAAAACCAATCATTGTGAAGAA
GAATTTGCGTATCTGTGTAGACTGTCATTCTGCACTGAAGTTCATTTCCAAGGTAGAAAG
CAGGGATATTATCGTTAGAGATAACTCCAGGTTCCACCATTTTGGGAAAGGGAGGTGTTC
CTGTGAAGATTACTGGTGATGAACTCATATCTCTTCTTTTGCATTAGCAAGGGCATCCTT
GAATCGTTGCCATCTGTCC

Homology of Contig U35_34977 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g34720.1	699	7e-101	protein\|LOI1, putative, expressed
Brachypodium v1_2	Bradi3g29450.1	696	2e-107
Arabidopsis v10	AT3G02010.1	825	4e-60	Pentatricopeptide repeat (PPR) superfamily protein \| chr3:337965-340442 FORWARD LENGTH=825