barSeed - Barley Seed Development Database

Probe CUST_33412_PI390587928

Source Contig U35_23944

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33412_PI390587928	Hv_44K_v2	ACAGCTAGTAGCTGACTGACCCTGGGACTGGGAAGGATCCATCCATGGTGTGGAAGAGCT	124	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_60617.10	2975	2e-24	2419 - 2478	100	60 / 60	minus	None
MLOC	MLOC_60617.11	3113	2e-24	2557 - 2616	100	60 / 60	minus	None
MLOC	MLOC_60617.2	4152	2e-24	3792 - 3851	100	60 / 60	minus	ABC18178
MLOC	MLOC_60617.12	2325	2e-24	1934 - 1993	100	60 / 60	minus	None
MLOC	MLOC_60617.1	4039	2e-24	3719 - 3778	100	60 / 60	minus	ABC18178
MLOC	MLOC_60617.4	4012	2e-24	3648 - 3707	100	60 / 60	minus	ABC18178
MLOC	MLOC_60617.9	4130	2e-24	3515 - 3574	100	60 / 60	minus	ABC18178
JLOC1	JLOC1_39543.4	2430	8e-25	295 - 354	100	60 / 60	plus
JLOC1	JLOC1_39543.3	2284	8e-25	287 - 346	100	60 / 60	plus
JLOC1	JLOC1_39543.2	4079	8e-25	300 - 359	100	60 / 60	plus
JLOC1	JLOC1_39543.1	4074	8e-25	300 - 359	100	60 / 60	plus
Harvest35	U35_23944	471	3e-25	125 - 184	100	60 / 60	plus

Contig Sequence (471 bp)

>U35_23944 471 Hv_44K_v2
ATATAGGCAGCGCGCCGTTCCCCGAGCCAGCCACACATGCACACTGCGCTGGGCATTCAC
TCCGCTGCCCGCTGCCCGCTGCCCTCTCCCTCCTCACGCACGCATTCAGCACTGTGCATC
TGCAACAGCTAGTAGCTGACTGACCCTGGGACTGGGAAGGATCCATCCATGGTGTGGAAG
AGCTGGGGACGGCGGCTGCTGCTGAGCGCCGTGGTGCTCCTCTGCTCGGGCGCGGCGGTC
GCTGCTGCTGCTGGCGACGTCTCCCTCAGCTTGACGAGCGCGCCGCCGCGCATCTCGACG
TCGGCGTCGGCGGTGTTCGCCTTCCGCGCCGTGCAGAGCAGCGGATGGACCTGCGGGGAC
TGCGCCATCACCTGCAAGTTGGACGGCGAAAGACGATCGGACTGCGGNGGGAACGGAAAT
GGGACGGAGGTGGTGAGCTTTGCCGGGCTCAAGGACGGGAACCACACATTC

Homology of Contig U35_23944 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None