barSeed - Barley Seed Development Database

Probe CUST_33407_PI390587928

Source Contig U35_35921

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33407_PI390587928	Hv_44K_v2	CTCTGTACTCCTATTGGTGATGTGTAATTTCTCATCTTATCAAACCTGTGCCAGTATTCT	618	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_2259.1	3573	2e-24	878 - 937	100	60 / 60	plus	ABC09788
MLOC	MLOC_2258.3	1824	2e-24	1325 - 1384	100	60 / 60	plus	None
MLOC	MLOC_2258.2	2328	2e-24	1136 - 1195	100	60 / 60	plus	ABC09788
JLOC1	JLOC1_1356.1	2581	8e-25	1598 - 1657	100	60 / 60	minus
JLOC1	JLOC1_1354.2	1935	8e-25	1111 - 1170	100	60 / 60	plus
Harvest35	U35_35921	681	3e-25	619 - 678	100	60 / 60	plus

Contig Sequence (681 bp)

>U35_35921 681 Hv_44K_v2
CTCCTATAGGGCGAATTGGGCCCTTTTCATAATGCTCGAGCGGCCGCTAGGATCTCATGA
GCCAAGGGGAGCTGTGGGATCACTTGTGCTCTGCATCAGAGTCATTTCCTGAGCATGTAC
AAGGCATACTCGCATCTCAGATCGAAGAACCGGGTGGTGCGGTCGGGCTTACAGTATGGC
ACAGATTTCGTAGCTTACCGTCATCACCCAGCGCTCGTCCACTCAGAGTTTGCTGTGGTT
GTCGTCCCAGAAGGAGTGGAGTTCGGCGGTAGGTGTAGCCGCCTGAATGTGTGGTCTGAT
CTACTGTGTGCACTACGAGCTTCTGGCAGTGTGGCCAAGACACTGCTGGTTCTAACCATC
TCCAGCAGTAATTGTGAACTGAGCTCCCCAGATTGTTTAGAACAACTGGTTGTTCACGAG
AGAACAATTAGTAGGTGGATAGCCCAGCAGTGCCGTGAGCAGCGATGTGAACCGCGCAGA
GAAGAAGCAGAGAAGGAAGAACAAGATCAGGCAAGAGAAACTGTAGTCTTCAACTATTTG
GGCGTAATACTAGGCTTCACAGTTCTTTCTAGCTTACTTGTATACAAGCTGAGATTCCGA
CAATAAACCTAAATATTTCTCTGTACTCCTATTGGTGATGTGTAATTTCTCATCTTATCA
AACCTGTGCCAGTATTCTTTT

Homology of Contig U35_35921 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g38930.1	293	1e-62	protein\|tRNA-splicing endonuclease subunit Sen2, putative, expressed
Brachypodium v1_2	Bradi1g29740.1	289	2e-62
Arabidopsis v10	None