barSeed - Barley Seed Development Database

Probe CUST_33404_PI390587928

Source Contig U35_35927

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33404_PI390587928	Hv_44K_v2	TATCAAAGTGTGCTGCTGTAAGTTGTAACAGTGTTGTGTACAGTTGTAGGCTCATGAATT	803	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_12117.3	1926	7e-23	1378 - 1438	98	60 / 61	minus	ABC09756 ABC12625
MLOC	MLOC_12117.1	2515	7e-23	1724 - 1784	98	60 / 61	minus	ABC05016 ABC05017 ABC09756 ABC12625
JLOC1	JLOC1_8112.1	2065	4e-23	604 - 664	98	60 / 61	plus
JLOC1	JLOC1_8111.1	2515	4e-23	1739 - 1799	98	60 / 61	minus
Harvest35	U35_35927	866	3e-25	804 - 863	100	60 / 60	plus
Harvest35	U35_5486	1487	1e-23	1388 - 1448	98	60 / 61	plus

Contig Sequence (866 bp)

>U35_35927 866 Hv_44K_v2
GGCGAATTGGGCCCTTTTCATAAATGCTCGAGCGGCCGCTGCAATTCCCGGGAGCATAAC
TATCACAAACTCTGTTGTTTCTATTCGTCAAGGAGCGGCTGTTCTTGACGAGGCATCTGG
CAACAGGCCCATGTGTGCCAAATCCCTTGCCAGGATGATAACAAGCATTTACACTGCCGT
CGCCGGCCTTGGTGAGGTGATCAGCAAAATCATACACCCTCAATCCTACCAAGCCGCTGA
GGGCCGTTCATACTTGAGTGGAGACCAAGTTAACTCCAGCGGCGATGATGATGGCACTGC
TCATGATAGTGAGCTGCGATGGCTCGACCGAAATGGCCTCATCACCTTAATGGAAGACTA
CAAAGATTTTTCAAAATCTTTGTCAAAAGTTTGGGAGTGTCTTGAGCGCGAAACCAGAGA
AGAGTCGAACAAAGATTTGGCCCCCCTAAGCGCCAACATAGTGGACAGCAATGACCGCGA
CGTGACGGAGATGTTCGCATCACAACTTAAACGAGTATTCCAGTTCCTGGACAGAGTGTA
CGAGATTCGCACAATTGTCAGAATTCGTGACAGTAATGAATTAGTCCCATCTGTTCTTGA
GCGGCCGCTCCCAGATTCCAAGCCGAGCAGGAGCAGAACATCATCTTCCAAATGAGCACA
CACACATTGACATTTCTTGAACAAATTAGTAATGATGGAAGCTTTGACTACGAAAGAGCT
GATGAAAAACATGTATTTTGTGTTGTTTCTGGATGGTTGTGACAGTTTGTGTATGATTTA
TTTGTAGAGGCTGGTTTTCCACTTATCAAAGTGTGCTGCTGTAAGTTGTAACAGTGTTGT
GTACAGTTGTAGGCTCATGAATTTAA

Homology of Contig U35_35927 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None